| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,632 | T→C | 12.6% | T1046T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,632 | 0 | T | C | 12.6% | 173.4 / 16.4 | 79 | T1046T (ACT→ACC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (34/35); new base C (6/4); total (40/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.37e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.35e-01 | |||||||||||
ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAAC‑CAT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGA > NC_002947/197487‑197780 | acacCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAAC‑CAT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGt > 1:219311/1‑148 (MQ=21) cacCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAAC‑CAT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCa < 2:219311/149‑1 (MQ=21) acCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAAC‑CAT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAg > 7:121864/1‑149 (MQ=21) acCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAAC‑CAT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAg > 4:141526/1‑149 (MQ=21) ccGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAAC‑CAT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGc < 2:145843/149‑1 (MQ=39) tCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAAC‑CAT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCCGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTcctc > 4:197942/1‑140 (MQ=255) tCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAAC‑CAT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGc < 3:197942/143‑1 (MQ=38) ccTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAAC‑CAT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGAGTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTGCGACCGTCAGCGTA‑Accc > 5:269559/1‑148 (MQ=255) cTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAAC‑CAT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCAt > 2:288770/1‑149 (MQ=37) gAGCAATCCTGCCCAGACGCCGGTACCCGTGACCCTGTCCAACGGCCAAAC‑CAT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACCGTGCGACCGTCAGCGTC‑CCCATc > 6:258774/1‑148 (MQ=11) aGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAAC‑CAT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATc > 2:106827/1‑147 (MQ=37) aGCAATCCTCCCCACACGCCGGAAACCGTGACCCTGTCAAACGCCAAAACACATCTACCGTTTACAGCGTCTAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATc < 1:115454/149‑1 (MQ=11) aTCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAAC‑CAT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAAc < 2:145555/149‑1 (MQ=37) cccAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAAC‑CAT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCg > 4:140958/1‑138 (MQ=17) cccAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAAC‑CAT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCg < 3:140958/138‑1 (MQ=17) cAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAAC‑GAT‑TACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGCCTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAgg > 3:89729/1‑149 (MQ=11) cAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAAC‑GAT‑TACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAgg < 2:354286/149‑1 (MQ=255) cAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAAC‑CAT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAgg > 7:89401/1‑149 (MQ=37) tAACCGTGACCCTGTCCAACGGCCAAAC‑CAT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCTGCGAATGACTTCTACAACAACGGTTCTACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTc < 5:258774/149‑1 (MQ=9) aCCGTGACCCTGTCCAACGGCCAAAC‑CAT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAGTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGa < 1:70374/149‑1 (MQ=21) aCCGTGACCCTGTCCAACGGCCAAAC‑CAT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGa < 8:233782/149‑1 (MQ=34) aCCGTGACCATGTCCAACGGCCAAAC‑CAT‑TACCGTTGAAGTCGGCAATACCCAGGGCAGCTTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGa < 1:296496/149‑1 (MQ=255) ccGTGACCCTGTCCAACGGCCAAAC‑GAT‑TACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAg > 4:350107/1‑149 (MQ=16) tCCAACGGCCAAAC‑CAT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑Acc < 4:342782/108‑1 (MQ=32) tCCAACGGCCAAAC‑CAT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑Acc > 3:342782/1‑108 (MQ=32) cAACGGCCAAAC‑CAT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCg > 1:53216/1‑148 (MQ=32) aCGGCCAAAC‑GAT‑TACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCa > 3:14813/1‑136 (MQ=12) aCGGCCAAAC‑GAT‑TACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCa < 4:14813/136‑1 (MQ=12) aCGGCCAAAC‑CAT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACACCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAc > 5:112224/1‑149 (MQ=17) cGGCCAAAC‑GAT‑TACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAcc < 6:211477/149‑1 (MQ=16) aC‑CAT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGTCCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGcc > 5:204027/1‑149 (MQ=37) c‑cAT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCg < 1:288770/149‑1 (MQ=37) aT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTc < 5:184005/120‑1 (MQ=32) aT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTc > 6:184005/1‑120 (MQ=32) aT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGc > 3:161704/1‑149 (MQ=37) ccGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGc > 1:299105/1‑120 (MQ=12) ccGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGc < 2:299105/120‑1 (MQ=12) ccGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAg < 2:130968/149‑1 (MQ=12) tgTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATGGAGAACGCCACAGGCGGTAATTTCGAGCAACGGACCCCGACCCCGCCGCCGGCTCAgc > 4:208474/2‑148 (MQ=255) cGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTc < 7:82043/115‑1 (MQ=12) cGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTc > 8:82043/1‑115 (MQ=12) cGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGa > 1:37873/1‑149 (MQ=12) ttGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGAc > 5:348860/1‑148 (MQ=37) gAAGCCGGCAAGACCCAGGGCATCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCTTCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGAcc < 1:106827/148‑1 (MQ=255) gAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCa < 2:45791/148‑1 (MQ=37) aaGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGCTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACAGACCCCGAACCCCACGCCCGCTCAGACCACg > 6:183385/1‑149 (MQ=255) aaGCCGGCAAACCCCAGGTCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACg < 4:89729/149‑1 (MQ=11) aGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGa < 2:124233/143‑1 (MQ=12) aGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGa > 1:124233/1‑143 (MQ=12) gCAAGACCCAGGGCAGCGTCGATTTCCAGTCCCCGGCGAATGACGTCTACACCAACGGTTCGACTGTCAGCGGC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAcc < 6:204027/149‑1 (MQ=255) gCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACTTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCACCTGACCCCGAACCCGACGCAGGCTCATACCACGAtaccc > 8:148350/1‑145 (MQ=11) cAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAcc > 6:357851/1‑148 (MQ=38) aaaCCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCAt > 1:127289/3‑76 (MQ=9) aaaCCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCAt < 2:127289/74‑1 (MQ=9) cgaGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCgg > 2:169745/3‑149 (MQ=39) cAGGGCAGCGTAGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGt < 7:148350/149‑1 (MQ=255) ggCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGa > 8:53481/1‑149 (MQ=39) gATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCacta < 2:53216/148‑1 (MQ=39) tCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGc < 3:337187/84‑1 (MQ=33) tCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGc < 4:161704/148‑1 (MQ=255) tCCAGACCCCGGCGAATGACGTCTACAACAACGGATCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGc > 4:337187/1‑84 (MQ=18) cAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCt > 7:98511/1‑108 (MQ=40) cAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCt < 8:98511/108‑1 (MQ=40) aCCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCt < 5:357851/149‑1 (MQ=255) gCGAATGACGTCTACAACAACGGTTCTACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGc < 8:89401/149‑1 (MQ=255) aCGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTAACCGCCTCGcc > 2:22809/1‑148 (MQ=255) tCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGACACAGGCGGTAATTTCGCGCAACTGACCCCGAACCAGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGc > 5:251051/1‑149 (MQ=255) caacaaCGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTc > 1:17498/1‑138 (MQ=255) caacaaCGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTc < 6:72018/138‑1 (MQ=255) caacaaCGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTc > 5:72018/1‑138 (MQ=255) caacaaCGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTc < 2:17498/138‑1 (MQ=255) caacaaCGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGt < 6:112224/147‑1 (MQ=255) aacaacGGTGCGACTGTAAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGAc < 6:251051/149‑1 (MQ=255) acaacGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCAAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGAcc > 1:94648/1‑149 (MQ=255) aacGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCg > 3:286967/1‑148 (MQ=255) acGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCTAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGaa < 7:53481/149‑1 (MQ=255) aCTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGc > 1:145308/1‑122 (MQ=255) aCTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGc < 2:145308/122‑1 (MQ=255) aCTGGCACCGGC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCTCGATCACGGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCCGCGt < 5:183385/149‑1 (MQ=18) tGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGAc < 3:280703/117‑1 (MQ=40) tGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGa > 4:105719/1‑149 (MQ=255) | ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAAC‑CAT‑TACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGA > NC_002947/197487‑197780 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |