| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,695 | G→C | 6.4% | T1067T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,695 | 0 | G | C | 6.4% | 246.2 / 5.8 | 78 | T1067T (ACG→ACC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base G (37/36); new base C (2/3); total (39/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.94e-01 | |||||||||||
ACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTC > NC_002947/197549‑197838 | aCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGTCCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGcc > 5:204027/1‑149 (MQ=37) ccATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCg < 1:288770/149‑1 (MQ=37) aTTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGc > 3:161704/1‑149 (MQ=37) ccGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAg < 2:130968/149‑1 (MQ=12) tgTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATGGAGAACGCCACAGGCGGTAATTTCGAGCAACGGACCCCGACCCCGCCGCCGGCTCAgc > 4:208474/2‑148 (MQ=255) cGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGa > 1:37873/1‑149 (MQ=12) ttGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGAc > 5:348860/1‑148 (MQ=37) gAAGCCGGCAAGACCCAGGGCATCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCTTCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGAcc < 1:106827/148‑1 (MQ=255) gAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCa < 2:45791/148‑1 (MQ=37) aaGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGCTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACAGACCCCGAACCCCACGCCCGCTCAGACCACg > 6:183385/1‑149 (MQ=255) aaGCCGGCAAACCCCAGGTCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACg < 4:89729/149‑1 (MQ=11) aGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGa > 1:124233/1‑143 (MQ=12) aGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGa < 2:124233/143‑1 (MQ=12) gCAAGACCCAGGGCAGCGTCGATTTCCAGTCCCCGGCGAATGACGTCTACACCAACGGTTCGACTGTCAGCGGC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAcc < 6:204027/149‑1 (MQ=255) gCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACTTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCACCTGACCCCGAACCCGACGCAGGCTCATACCACGAtaccc > 8:148350/1‑145 (MQ=11) cAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAcc > 6:357851/1‑148 (MQ=38) cgaGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCgg > 2:169745/3‑149 (MQ=39) cAGGGCAGCGTAGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGt < 7:148350/149‑1 (MQ=255) ggCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGa > 8:53481/1‑149 (MQ=39) gATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCacta < 2:53216/148‑1 (MQ=39) tCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGc < 4:161704/148‑1 (MQ=255) cAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCt > 7:98511/1‑108 (MQ=40) cAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCt < 8:98511/108‑1 (MQ=40) aCCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCt < 5:357851/149‑1 (MQ=255) gCGAATGACGTCTACAACAACGGTTCTACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGc < 8:89401/149‑1 (MQ=255) aCGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTAACCGCCTCGcc > 2:22809/1‑148 (MQ=255) tCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGACACAGGCGGTAATTTCGCGCAACTGACCCCGAACCAGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGc > 5:251051/1‑149 (MQ=255) caacaaCGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTc < 2:17498/138‑1 (MQ=255) caacaaCGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTc > 5:72018/1‑138 (MQ=255) caacaaCGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTc < 6:72018/138‑1 (MQ=255) caacaaCGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTc > 1:17498/1‑138 (MQ=255) caacaaCGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGt < 6:112224/147‑1 (MQ=255) aacaacGGTGCGACTGTAAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGAc < 6:251051/149‑1 (MQ=255) acaacGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCAAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGAcc > 1:94648/1‑149 (MQ=255) aacGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCg > 3:286967/1‑148 (MQ=255) acGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCTAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGaa < 7:53481/149‑1 (MQ=255) aCTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGc < 2:145308/122‑1 (MQ=255) aCTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGc > 1:145308/1‑122 (MQ=255) aCTGGCACCGGC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCTCGATCACGGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCCGCGt < 5:183385/149‑1 (MQ=18) tGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGAc < 3:280703/117‑1 (MQ=40) tGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGa > 4:105719/1‑149 (MQ=255) tCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑c > 4:252158/1‑92 (MQ=37) tCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑c < 3:252158/92‑1 (MQ=37) tCAGCGTC‑ACCATCGAGAACGCAACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGAt > 5:309050/1‑148 (MQ=255) cAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAggcggc > 2:137766/1‑142 (MQ=255) cAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAggcggc < 1:137766/142‑1 (MQ=255) cAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCa > 3:44903/1‑149 (MQ=255) aGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGAc > 1:20992/1‑107 (MQ=40) aGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGAc < 2:20992/107‑1 (MQ=40) aGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGAt > 5:42146/1‑146 (MQ=255) aGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGAt < 6:42146/146‑1 (MQ=255) aGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCAc > 4:256941/1‑149 (MQ=255) gCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCAcc > 5:251422/1‑149 (MQ=255) gCGTC‑ACCAGCGAGAACTCCACAGGCGGTAATCTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCAcc < 6:251422/149‑1 (MQ=255) cGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCAcc > 1:251/1‑148 (MQ=255) aCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTaca < 2:94648/148‑1 (MQ=255) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCg < 1:169745/149‑1 (MQ=255) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCg > 6:135113/1‑149 (MQ=255) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGt > 6:262030/1‑149 (MQ=255) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGt > 1:200595/1‑148 (MQ=255) gaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGAccc > 6:368979/1‑149 (MQ=255) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGaa > 1:109567/1‑118 (MQ=255) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGaa < 2:109567/118‑1 (MQ=255) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGa < 6:348860/149‑1 (MQ=255) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGa < 4:44903/149‑1 (MQ=255) cacaGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGc > 2:250715/1‑148 (MQ=255) cGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTAACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTg < 1:22809/149‑1 (MQ=255) ggTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATTACCTACACCGTGACCCTGAGCAATCCTGc < 6:309050/149‑1 (MQ=255) ggTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGc < 2:251/149‑1 (MQ=255) aTTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCa < 3:256941/148‑1 (MQ=255) ttCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGAc > 8:339164/1‑149 (MQ=255) aCCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGt < 2:200595/149‑1 (MQ=255) cccGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTGCGACACCACTACTGCGAcc > 1:249456/1‑62 (MQ=255) cccGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGAcc < 2:249456/61‑1 (MQ=40) gAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCt > 2:199872/1‑149 (MQ=255) aaCCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCtt < 5:135113/149‑1 (MQ=255) cccGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTg > 5:67662/1‑148 (MQ=255) ccGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTc < 3:105719/149‑1 (MQ=255) | ACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGT‑CGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTC > NC_002947/197549‑197838 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |