Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,234,803 | G→A | 11.3% | intergenic (+44/‑103) | PP_2833 → / → PP_2834 | LysR family transcriptional regulator/D‑galactarate dehydratase/altronate dehydratase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,234,803 | 0 | G | A | 11.3% | 110.9 / 5.3 | 44 | intergenic (+44/‑103) | PP_2833/PP_2834 | LysR family transcriptional regulator/D‑galactarate dehydratase/altronate dehydratase |
Reads supporting (aligned to +/- strand): ref base G (21/18); new base A (2/3); total (23/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.58e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.89e-01 |
TGAACCGCTCAGCGCCTCCGCCAGGGCGTTTGTCGAGATTCTGCTGGAGGGCGCGCAACGCCGGCGGCAATCTTCGGAAGACACTGCGTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAGTGGCTACAGCCATAACAAGAAGTCAGCCGCTCCGCCCTGAGAGGTCCCATGCAACTGATTGCCAAATCCGGTGACCCCGCCGTCAT > NC_002947/3234660‑3234943 | tGAACCGCTCAGCGCCTCCGCCAGGGCGTTTGTCGAGATTCTGCTGGAGGGCGCGCAACGCCGGCGGCAATCTTCGGAAGACACTGCGTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACTTCAGGTTAt > 3:328479/1‑149 (MQ=255) aCCGCTCAGCGCCTCCGCCAGGGCGTTTGTCGAGATTCTGCTGGAGGGCGCGCAACGCCGGCGGCAATCTTCGGAAGCCACTGCGTTCTGCCCCTAGCCGATTGAAGATAACGTTCCGAAATACGCGTTCGATAACTTCAGGTTATCGc > 8:245489/1‑149 (MQ=255) aCCGCTCAGCGCCTCCGCCAGGGCGTTTGTCGAGATTCTGCTGGAGGGCGCGCAACGCCGGCGGCAATCTTCGGAAGACACTGCGTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACCTGAAGTTATCg > 5:230207/1‑148 (MQ=255) ccGCTCAGCGCCTCCGCCAGGGCGTTTGTCGAGATTCTGCTGGAGGGCGCGCAACGCCGGCGGCAATCTTCGGAAGACACTGCGTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACCTGAAGTTATCga > 4:251382/1‑147 (MQ=255) cGCTCAGCGCCTCCGCCAGGGCGTTTGTCGAGATTCTGCTGGAGGGCGCGCAACGCCGGCGGCAATCTTCGGAAGACACTGCGTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACCTGAAGTTATCgaaa < 6:230207/149‑4 (MQ=255) gCTCAGCGCCTCCGCCAGGGCGTTTGTCGAGATTCTGCTGGAGGGCGCGCAACGCCGGCGGCAATCTTCGGAAGACACTGCGTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACCTGAAGTTATCgaaag < 3:251382/149‑5 (MQ=255) aGCGCCTCCGCCAGGGCGTTTGTCGAGATTCTGCTGGAGGGCGCGCAACGCCGGCGGCAATCTTCGGAAGACACTGCGTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATc < 6:30691/148‑1 (MQ=255) ccTCCGCCAGGGCGTTTGTCGAGATTCTGCTGGAGGGCGCGCAACGCCGGCGGCAATCTTCGGAAGACACTGCGTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGatc < 2:149223/149‑1 (MQ=255) cTCCGCCAGGGCGTTTGTCGAGATTCTGCTGGAGGGCGCGCAACGCCGGCGGCAATCTTCGGAAGACACTGCGTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCg > 6:22386/1‑144 (MQ=255) cTCCGCCAGGGCGTTTGTCGAGATTCTGCTGGAGGGCGCGCAACGCCGGCGGCAATCTTCGGAAGACACTGCGTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCg < 5:22386/144‑1 (MQ=255) ggCGTTTGTCGAGATTCTGCTGGAGGGCGCGCAACGCCTGCTGCAATCTTCGGAAGACACTGCGTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCATCTCATTgg < 8:123302/149‑1 (MQ=255) gCGTTTGTCGAGATTCTGCTGGAGGGCGCGCAACGCCGGCGGCAATCTTCGGAAGACACTGCGTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCAtctc < 6:352140/143‑1 (MQ=255) gCGTTTGTCGAGATTCTGCTGGAGGGCGCGCAACGCCGGCGGCAATCTTCGGAAGACACTGCGTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCAtctc > 5:352140/1‑143 (MQ=255) ctgGAGGGCGCGCAACGCCGGCGGCAATCTTCGGAAGACACTGCGTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGcttc < 6:210809/149‑1 (MQ=255) tgGAGCGCGCGCAACGCCGGCAGCAATCTTCGGAAGACACTGCGTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCATCACATTGGGAATGAGGCACCAGGcatct > 4:222836/1‑149 (MQ=255) gggCGCGCAACGCCGGCGGCAATCTTCGGAAGACACTGCGTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTa > 1:153194/1‑147 (MQ=255) gggCGCGCAACGCCGGCGGCAATCTTCGGAAGACACTGCGTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACTTCAGGGTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCCCCAGGCTTCTTACa > 5:268240/1‑149 (MQ=255) ggCGCGCAACGCCGGCGGCAATCTTCGGAAGACACTGCGTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAg > 4:41157/1‑149 (MQ=255) aaCGCCGGCGGCAATCTTCGGAAGACACTGCGTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAGTGGCTAc < 5:112455/149‑1 (MQ=255) gCCGGCGACAATCTTCGGAAGACACTGCGTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAGTGGCTACAGc < 6:56837/149‑1 (MQ=255) cggcAATCTTCGGAAGACACTGCGTTCTGCCCCTAGCCGATTGAAGATCACGTACCGTAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAGTGGCTACAGCCATaa < 3:222836/149‑1 (MQ=255) tCTTCGGAAGACACTGCGTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAGTGGCTACAGCCATAACaag > 7:279885/1‑147 (MQ=255) gAAGACACTGCGTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCCCCAGGCTTCTTACAGTGGCTACAGCCATAACAAGAAGTCAGc < 6:268240/149‑1 (MQ=255) acTGCGTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAGTGGCTACAGCCATAACAAGAAGTCAGCCGCTcc > 4:222301/1‑149 (MQ=255) cGTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAGTGGCTACAGCCATAACAAGAAGTCAGCCGCTCCGc < 7:245489/147‑1 (MQ=255) gTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAGTg > 5:79748/1‑113 (MQ=255) gTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAGTg < 6:79748/113‑1 (MQ=255) ccccTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACTTCAGGTTATAGATCGATCGCATCATATCATTGGGAATGCGTCACCAGGCTTATTAAAGTGGCTACAGCCATAAAAAGAATTCATCCGCTCCGCCCTGagag > 7:9166/1‑148 (MQ=255) cccTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAGTGGCTACAGCCATAACAAGAAGTCAGCCGCTCCGCCCTGAGAGGt > 3:228588/1‑149 (MQ=255) gAAGATCACGTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAGTGGCTACAGCCATAACAAGAAGTCAGCCGCTCCGCCCTGAGAGGTCCCATGCAACt > 5:156943/1‑148 (MQ=255) tCACGTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAGTGGCTACAGCCATAACAAGAAGACAGCCGATCCGCCCTGAGAGGTCCCATGCAACTGATTGc > 2:326923/1‑149 (MQ=255) cACGTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAGTGGCTACAGCCATAACAAGAAGTCAGCCGCTCCGCCCAGAGAGGTCCCATGCAACTGATTGc > 1:150556/1‑148 (MQ=255) aCGTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAGTGGCTACAGCCATAACAAGAAGTCAGCCGCTCCGCCCTGAGAGGTCCCATGCAACTGATTGcc < 6:156943/148‑1 (MQ=255) gTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAGTGGCTACAGCCATAACAAGAAGTCAGCCGCTCCGCCCTGAGAGGTCCCATGCAACTGATTGCCaaa < 2:153194/149‑1 (MQ=255) ccGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAGTGGCTACAGCCATAACAAGAAGTCAGCCGCTCCGCCCTGAGAGGTCCCATGCAACTGATTGCCAAATc < 5:352855/148‑1 (MQ=255) gAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAGTGGCTACAGCCATAACAAGAAGTCa > 5:77409/1‑103 (MQ=255) gAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAGTGGCTACAGCCATAACAAGAAGTCa < 6:77409/103‑1 (MQ=255) aaaTACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAGTGGCTACAGCCATAACAAGAAGTCAGCCGCTCCGCCCTGAGAGGTc > 8:189777/1‑123 (MQ=255) atcgatCGATAACCTGAAGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAGTGGCTACAGCCATAACAAGAAGTCAGCCGCTCCGCCCTGagag < 5:235588/110‑1 (MQ=255) aTAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAGTGGCTACAGCCATAACAAGAAGTCAGCCGCTCCGCCCTga > 6:4688/1‑104 (MQ=255) aTAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAGTGGCTACAGCCATAACAAGAAGTCAGCCGCTCCGCCCTga < 5:4688/104‑1 (MQ=255) aTAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAGTGGCTACAGCCATAACAAGAAGTCAGCCGCTCCGCCCTGAGAGGTCCCATGCAACTGATTGCCAAATCCGGTGACCCCGCCGTCa > 1:184928/1‑149 (MQ=255) tAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAGTGGCTACAGCCATAACAAGAAGTCAGCCGCTCCGCCCTGAGAGGTCCCATGCAACTGATTGCCAAATCCGGTGACCCCGCCGTCAt < 2:150556/149‑1 (MQ=255) tAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAGTGGCTACAGCCATAACAAGAAGTCAGCCGCTCCGCCCTGAGAGGTCCCATGCAACTGATTGCCAAATCCGGTGACCCCGCCGTCAt > 6:311124/1‑149 (MQ=255) | TGAACCGCTCAGCGCCTCCGCCAGGGCGTTTGTCGAGATTCTGCTGGAGGGCGCGCAACGCCGGCGGCAATCTTCGGAAGACACTGCGTTCTGCCCCTAGCCGATTGAAGATCACGTACCGAAATACCCTTTCGATAACTTCAGGTTATCGCTCGATCGGATCATCTCATTGGGAATGCGGCACCAGGCTTCTTACAGTGGCTACAGCCATAACAAGAAGTCAGCCGCTCCGCCCTGAGAGGTCCCATGCAACTGATTGCCAAATCCGGTGACCCCGCCGTCAT > NC_002947/3234660‑3234943 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |