| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,402,505 | C→T | 9.8% | intergenic (+29/‑123) | PP_3010 → / → PP_3011 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,402,505 | 0 | C | T | 9.8% | 198.0 / 8.4 | 71 | intergenic (+29/‑123) | PP_3010/PP_3011 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (34/30); new base T (4/3); total (38/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.07e-01 | |||||||||||
CTTGTAGAGTTGCGGGGCACGGGAAGCGAGCGCCACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTTGGATGGAGAGTCGCAGGT > NC_002947/3402363‑3402653 | cTTGTAGAGTTGCGGGGCACGGGAAGCGAGCGCCACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTc > 1:207484/1‑146 (MQ=255) ttGCGGGGCACGGGAAGCGAGCGCCACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAGCCCCCACACCAATAGCCCGCTCTCGACGGCGGGCta < 8:90397/149‑2 (MQ=255) ttGCGGGGCACGGGAAGCGAGCGCCACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCtt > 7:65584/1‑149 (MQ=255) cGGGGCACGGGAAGCGAGCGCCACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCttttt < 4:303803/149‑1 (MQ=255) gggCACGGGAAGCGAGCGCCACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTtgt > 2:225134/1‑149 (MQ=255) cACGGGAAGCGAGCGCCACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACAAAAAGCCCGCTCTCGACGGCGGGCTATTggtgtg < 6:173200/149‑1 (MQ=38) gggAAGCCAGCGCCACTTCACGGCCTATCATCGTGATGCCTGGTACGACGATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACAAAAAGCCCGCTCTCGACGGCGGGCTATTggtgtgggg < 8:141164/149‑4 (MQ=37) cgcCACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGcc < 7:174883/149‑1 (MQ=255) gcCACTTCACGGCCTATCAACGTGATGGCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGccc > 1:197671/1‑149 (MQ=255) cACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCg‑‑g < 1:225134/149‑1 (MQ=255) aCGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCa > 8:321353/1‑145 (MQ=255) aCGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCa < 7:321353/145‑1 (MQ=255) cGGCCTATCAACGTGATGCCTGGTACGACCATGGCATGTTGCTGGATGCTGCACTGATGTGTTAAAAAGCGTAATCATCCAACCCCCTCACCTATAGCCCGGCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGtt < 7:175630/149‑1 (MQ=255) gCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTc > 6:183489/1‑148 (MQ=255) ccTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCaa < 8:65584/149‑1 (MQ=255) tCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCttttt > 5:17108/1‑114 (MQ=255) tCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCttttt < 6:17108/114‑1 (MQ=255) tCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCaaaaaa < 5:183489/149‑1 (MQ=255) aTGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCggg < 2:207484/149‑1 (MQ=255) cTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGc > 5:325839/1‑108 (MQ=255) cTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGc < 6:325839/108‑1 (MQ=255) ggTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGc > 7:115487/1‑149 (MQ=255) cGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGt < 2:197671/149‑1 (MQ=255) gACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑a < 3:186651/149‑1 (MQ=255) aCCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCgg < 6:220060/136‑1 (MQ=255) aCCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCgg > 5:220060/1‑136 (MQ=255) gTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGagca < 3:299517/149‑1 (MQ=255) gCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGagcagc < 2:3549/148‑1 (MQ=255) cTGGATGCTGCACGGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGt > 4:321284/1‑149 (MQ=255) tgcACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTg > 2:271475/1‑148 (MQ=255) tgcACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCAGCGCCTGCCAG‑‑GCA‑ACGTTCAAAAAAATGGCGGGTGGAGCCGGT‑CTGGCCTGAGCATCTTTGA‑tttt > 4:198047/1‑147 (MQ=255) tGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTgg < 2:288977/113‑1 (MQ=255) tGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTgg > 1:288977/1‑113 (MQ=255) tGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTg > 7:49833/1‑149 (MQ=255) aTGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGcc > 5:134226/1‑149 (MQ=255) gtgtTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCgg > 3:225343/1‑149 (MQ=255) ttCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGccc > 7:229451/1‑149 (MQ=255) tCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGcccc > 1:188210/1‑149 (MQ=255) cAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGCGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGTCGCGTCGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTTCATTTGCCGGAcccg > 2:358344/1‑149 (MQ=255) aaGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCcccgccc > 7:187921/1‑149 (MQ=255) aaGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCcccgccc > 3:283530/1‑149 (MQ=255) cGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTg < 2:299415/97‑1 (MQ=255) cGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTg > 1:299415/1‑97 (MQ=255) aaTCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGAGGAGGCGTTCAAAAAAAGGGCCGGTTGAACCCGTAATGGCAT‑AACAGCCTTTCATTTGAATTTCCCGGCcccgccgt > 1:111309/1‑146 (MQ=255) atcCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCCCCGCCCGTAATATTCg > 5:70493/1‑149 (MQ=255) atcCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCCCCGCCCGTAATATTCg > 8:200672/1‑149 (MQ=255) atcCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCCCCGCCCGTAATATTCg < 7:200672/149‑1 (MQ=255) cAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCCCCGCCCGTAATATTCGtt < 4:283530/148‑1 (MQ=255) cAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTg < 6:134226/149‑1 (MQ=255) tgggcacacaAAAAGCCCGCTCTCGACGGCGGGCTATTGGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTAt > 7:304810/5‑149 (MQ=37) cccACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTAttt > 1:76482/1‑149 (MQ=255) gcacacaAAAAGCCCGCTCTCGACGGCGGGCTATTGGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTtg > 2:231826/2‑149 (MQ=38) ccACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑At > 4:107283/1‑91 (MQ=255) ccACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑At < 3:107283/91‑1 (MQ=255) ccACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTtg > 8:240809/1‑149 (MQ=255) ccACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTCGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTtg > 2:285965/1‑149 (MQ=255) acacCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGc > 5:331044/1‑92 (MQ=255) acacCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGc < 6:331044/92‑1 (MQ=255) acacCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTtgga > 6:34259/1‑149 (MQ=255) cacCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTtggat < 8:49833/149‑1 (MQ=255) cacCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTtggat < 4:225343/149‑1 (MQ=255) acaaaaaGCCCGCTCTCGACGGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTtggatg > 1:292371/7‑149 (MQ=255) acCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTtggatg > 2:29401/1‑149 (MQ=255) acCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTtggatg < 5:172121/149‑1 (MQ=255) ccAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTtggatgg < 8:229451/149‑1 (MQ=255) cAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCCCCGCCCGTa > 4:101556/1‑127 (MQ=255) cAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCCCCGCCCGTa < 3:101556/127‑1 (MQ=255) cAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTtggatgga < 3:321284/149‑1 (MQ=255) cAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTtggatgga < 5:34259/149‑1 (MQ=255) aaaaaGCCCGCTCTCGACGGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTtggatg > 8:271567/5‑147 (MQ=255) gCCCTCCGTCGAGAGCTGGCTTTTTGTGTGCCAATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGTGTGGAGCCGGT‑ATGGACTGAGCAGCGTTGC‑TTTGCATTTGCCGTCCCCGCCCGTAATATTCGTTGTATTTGGATGGAGAGt < 6:151606/148‑1 (MQ=255) cgTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTTGGATGGAGAGTCGCAGGt < 1:271475/149‑1 (MQ=255) | CTTGTAGAGTTGCGGGGCACGGGAAGCGAGCGCCACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCG‑‑GCA‑ACGTTCAAAAAAAGGGCGGGTGGAGCCGGT‑ATGGCCTGAGCAGCGTTGC‑TTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTTGGATGGAGAGTCGCAGGT > NC_002947/3402363‑3402653 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |