New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 278744	16 (0.500)	8 (0.270)	6/268	2.9	31.5%	intergenic (‑239/+75)	PP_0224/sctC	DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein
	?	NC_002947	= 278792	20 (0.680)					intergenic (‑287/+27)	PP_0224/sctC	DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein

ATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGT‑AACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCGCTGCAAACAGGGCCTTGGCCTCGCCTTGCTCCACGATCACGCCTTTGTCGAA  >  NC_002947/278647‑278935                                                                                                                                                   |                                                                                                                                                atataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGTGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGt                                                                                                                                                 <  6:2646/147‑1 (MQ=255) atataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGt                                                                                                                                                 <  1:15653/147‑1 (MQ=255)                           ttATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAAACCGCTCCTTCACACATGGCTCAAGATCTGTGCCCTGTAGGAGCGGGTTTACCCGCGCAAGGGCCGGGACAgggt                                                                                                                      >  5:139466/1‑146 (MQ=255)                                 cctaactTTTTGGAATATTAATAGAAGGGGGATTTGTTACCGAGGGCCCGGGCTCTGCGCGGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCg                                                                                                                <  5:160850/147‑1 (MQ=38)                                  ctaactTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAACCCGCTCCTACACACATGCCTCAAGATCTTTGCACTGTAGGCTCCGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTc                                                                                                                 >  2:129859/1‑146 (MQ=255)                                   taactTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGa                                                                                                              <  6:44040/148‑1 (MQ=255)                                       tttttGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAAACCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGcc                                                                                                          >  7:89906/1‑148 (MQ=255)                                       tttttGGAATATTTATAGAAGGGGGATTTGTTACAGAGGGGCCGGGCTCTGCGCGGGTAAACCCGCTCCTACACACATCCCTCAAGATCTGGGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGcc                                                                                                          <  7:42905/148‑1 (MQ=39)                                          ttGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCa                                                                                                       >  1:12418/1‑148 (MQ=255)                                                                 tttGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAACCCGCTCCCGCACACATGCCTGAAGCACTGTGGACCGGAGGCTCGGGGTTCCCCGCGCTAGGGCCGGGACCGGGTGACGCGGAGGCCGCCGTCACGCGGCCCTTTCGCacccc                                                                                >  7:150920/1‑144 (MQ=255)                                                                                       ctTCGCGGTTAAAACAGCTCCTACAAACATGCCTCAAGATCTGTCCACTGTAGTAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTcttccttc                                                          <  8:110338/148‑1 (MQ=255)                                                                                                  aaCCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCGCTGCaa                                                >  5:62613/1‑147 (MQ=255)                                                                                                   aCCCGCTCCTACACACATGCCTCAAGTTCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCGCTGCaaa                                               <  2:6529/147‑1 (MQ=255)                                                                                                    cccGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCGCTGCAAACa                                             >  6:174300/1‑148 (MQ=255)                                                                                                     ccGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTttacccgcgaagagcccggcacctctgtaacaaatcccccttctataaatattccaaaaagttagttcataaaaattttataaatcattagggtatatata                                            <  1:113022‑M2/148‑102 (MQ=255)                                                                                                     ccGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTttacccgcgaagagcccggcacctctgtaacaaatcccccttctataaatattccaaaaagttagttcataaaaattttataaatcattagggtatatata                                            <  3:30698‑M2/148‑102 (MQ=255)                                                                                                     ccGCTCCTACACACATGCCTCAAGAGCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCGCTGCAAACAg                                            <  2:3933/148‑1 (MQ=255)                                                                                                      cGCTCCTACACACATGCCGAAAGATGTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCGCTGCAAACAgg                                           <  7:55067/148‑1 (MQ=255)                                                                                                       gCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTttacccgcgaagagcccggcacctctgtaacaaatcccccttctataaatattccaaaaagttagttcataaaaattttataaatcattagggtatatatacc                                          <  5:7388‑M2/148‑104 (MQ=255)                                                                                                                      ccTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCGCTGCAAACAGGGCCATGGCCTCGCCtt                           <  7:15886/148‑1 (MQ=255)                                                                                                                                  atgtgggtaggagCGGGTttacccgcgaagagcccggcacctctgtaacaaatcccccttctataaatattccaaaaagttagttcataaaaattttataaatcattagggtatatataccggaccaccggaccagcacacgtctgtc               >  8:15886‑M2/7‑18 (MQ=255)                                                                                                                                        gTAGGAGCGGGTttacccgcgaagagcccggcacctctgtaacaaatcccccttctataaatattccaaaaagttagttcataaaaattttataaatcattagggtatatataccggaccaccggaccagcacacgtctgtcgcga           <  3:70154‑M2/146‑135 (MQ=255)                                                                                                                                        gTAGGAGCGGGTttacccgcgaagagcccggcacctctgtaacaaatcccccttctataaatattccaaaaagttagttcat                                                                           <  1:108765‑M2/82‑71 (MQ=255)                                                                                                                                         tAGGAGCGGGTttacccgcgaagagcccggcacctctgtaacaaatcccccttctataaatattccaaaaagttagttcata                                                                          >  2:108765‑M2/1‑11 (MQ=255)                                                                                                                                          aGGTGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCGCTGCAAACAGGGCCTTGGCCTCGCCTTGCTCCACGATCACGCCttt        <  6:171493/147‑1 (MQ=255)                                                                                                                                            gAGCGGGTttacccgcgaagagcccggcacctctgtaacaaatcccccttctataaatattccaaaaagttagttcataaaaattttataaatcattagggtatatataccggaccaccggaccagcacacgtctgtcgcgatcagct     <  4:52847‑M2/148‑141 (MQ=255)                                                                                                                                               cGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCGCTGCAAACATGGCCTTGGCCTCGCCTTGCTCCACGATCACGCCTTTGTCgaa  <  8:33027/148‑1 (MQ=255)                                                                                                                                               cGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCGCTGCAAACAGGGCCTTGGCCTCGCCTTGCTCCACGCTCACGCCTTTGTc     >  2:153636/1‑145 (MQ=255)                                                                                                                                               cGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCGCTGCAAACAGGGCCTTGGCCTCGCCTTGCTCCACGATCACGCCTTTGTc     >  1:58115/1‑145 (MQ=255)                                                                                                                                                gggTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCGCTGCAAACAGGGCCTTGGCCTCGCCTTGCTCCACGATCACGCCTTTGTCgaa  >  3:81360/1‑147 (MQ=255)                                                                                                                                                   |                                                                                                                                                ATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGT‑AACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCGCTGCAAACAGGGCCTTGGCCTCGCCTTGCTCCACGATCACGCCTTTGTCGAA  >  NC_002947/278647‑278935

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.