New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1947800	23 (0.720)	3 (0.110)	3/238	3.8	11.3%	intergenic (‑61/+109)	PP_1748/PP_1749	hypothetical protein/acetyltransferase
	?	NC_002947	= 1947867	28 (1.070)					intergenic (‑128/+42)	PP_1748/PP_1749	hypothetical protein/acetyltransferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTGGCCTCGATGATC  >  NC_002947/1947723‑1948014                                                                                                                                                 |                                                                                                                                                    gggAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGTTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTc                                                                                                                                                  <  8:37729/148‑1 (MQ=255)        gTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGaca                                                                                                                                            >  3:113517/1‑147 (MQ=255)                   tCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGAAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTc                                                                                                                                 <  2:33225/147‑1 (MQ=255)                    ccAGGCCTCCGGTGGGGTTAAAATTTTGCAGGCTTGGGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTccc                                                                                                                               <  4:113517/148‑1 (MQ=255)                                       aaatTTTTGCAGTGTTGTGGGAGCGGCGTTGTGTCGCTAATGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGtt                                                                                                             <  8:93401/147‑1 (MQ=25)                                       aaaaTTTGGCAGTCTTGTGGTCGCGGCCTTGTGTCGCTAAAGGGCCGAAACGCGGCCCCGGCAATCTCGGCAGCGAAGCGGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGtt                                                                                                             <  8:93403/147‑1 (MQ=25)                                                    cTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCGGCCCCGGCAATATAGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTAGCGACACAACGCCGCTCCCACAAAAACCCCAGCAGTTTTCAGGCCAAcggc                                                                                               >  8:1865/1‑148 (MQ=25)                                                     ttGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGAcaca                                                                                                                                          >  3:46524/1‑104 (MQ=255)                                                      tgtgGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACaa                                                                                                                                         <  4:46524/104‑1 (MQ=255)                                                            aGCGGCGTTGTGGCGCAAAAGGGCCGCAACGCGCCCCCGGAAAAATCGGCAGCGACGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATg                                                                                       <  3:39676/148‑1 (MQ=37)                                                                 ccTTGTGTCGCGAAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGACAACCGCCCGCTATGGGGaa                                                                                  >  4:14296/1‑148 (MQ=255)                                                                   ttGTGTCGCGAAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTAGCGACACAAGGCCGCTCCCACAAAAATCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAAc                                                                                >  2:95050/1‑148 (MQ=255)                                                                                    cGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATgg                                                                                      >  3:151742/1‑125 (MQ=255)                                                                                     gCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATggg                                                                                     <  4:151742/125‑1 (MQ=255)                                                                                     gCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGc                                                              >  5:44624/1‑148 (MQ=255)                                                                                     gCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCCACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGc                                                              <  7:1865/148‑1 (MQ=255)                                                                                            ggCCCCGCCAATATCGGCAGCGAAGCTGAGACCCTCGGGGCGCTTCGCACCCCATGCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTcggcgg                                                       <  3:130299/148‑1 (MQ=255)                                                                                             gCCCCGGCAATAGGGGCAGCGAACCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGt                                                      <  3:142956/148‑1 (MQ=255)                                                                                                     aaTATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCg                                              >  3:158144/1‑148 (MQ=255)                                                                                                          cGGCAGCGAAGCTTAGACCCTAGGGGCGGTTCTCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCa                                         <  2:57392/148‑1 (MQ=255)                                                                                                            gccgCGACGCGGAGACCCTCGGGGCGCTCCGCCCCCCAGTCGCGCCACACGGCCGCTCCCACAAAAAGCCGAGCAGGCGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATg                                       <  1:153347/145‑1 (MQ=255)                                                                                                               gCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACAAATGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGtt                                    <  3:156341/148‑1 (MQ=255)                                                                                                                cGAAGCTGAGACCTTAGTGTCGGTTCGCACCCCATTCCCTACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGGTATGGGGATACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTg                                   <  6:131251/148‑1 (MQ=255)                                                                                                                 gAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCACCGGCCGGCTATGGGGAAACAGCAGGTCGATAAACCGCTCGGCGGTGGGCTGCGGTTCATGGTTgg                                  >  7:133357/1‑148 (MQ=255)                                                                                                                    gcggagaCCCGAGGGGCGCTGCGCACCCCATGCGCCACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCCGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTggcca                               <  5:161641/145‑1 (MQ=255)                                                                                                                      tGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTggccagg                             >  4:110111/1‑148 (MQ=255)                                                                                                                         gaCCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTggccaggc                            <  3:14296/146‑1 (MQ=255)                                                                                                                                     gcTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTg              <  4:28150/148‑1 (MQ=255)                                                                                                                                         cGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTGGCCt          >  8:60289/1‑148 (MQ=255)                                                                                                                                             ccccATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTGGCCTCga       >  5:64894/1‑147 (MQ=255)                                                                                                                                              cccATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTCGCCTCgatg     >  2:38486/1‑148 (MQ=255)                                                                                                                                               ccATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGt                                     >  1:23859/1‑115 (MQ=255)                                                                                                                                                cATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGtt                                    <  2:23859/115‑1 (MQ=255)                                                                                                                                                 aTTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGTACGTTCGTTGGCCTCGATGATc  <  6:163651/148‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                    GGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTGGCCTCGATGATC  >  NC_002947/1947723‑1948014

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.