Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_002947 | 3,845,705 | +G | intergenic (‑72/+26) | PP_3394 ← / ← PP_3395 | 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,845,703 | 1 | . | G | 96.4% | 185.4 / 0.4 | 56 | intergenic (‑70/+28) | PP_3394/PP_3395 | 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base . (1/1); new base G (31/23); total (32/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.67e-01 |
GCTGCTGTCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑C‑GGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCAGATGACGAATTCACCAAGC > NC_002947/3845557‑3845842 | gctgctGTCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTc‑g‑c‑g < 2:276458/148‑1 (MQ=255) cATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATc > 8:194130/1‑149 (MQ=255) aTGATCACTTGCAGGCTCTGCAAGCTATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCg > 3:283670/1‑149 (MQ=255) ttGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCAc > 7:221716/1‑149 (MQ=255) aGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATg < 2:234272/149‑1 (MQ=255) gCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCTGAAAAGACGTGTTTC‑G‑CGGGCTGATCCTTCGTCAGGCACGAGGGa > 4:253385/1‑149 (MQ=255) gCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTC‑TCTCTGTCTGAAGCGTTGAGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGa > 5:176105/1‑149 (MQ=255) ctctGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGAt < 7:194130/149‑1 (MQ=255) tctGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTC‑TCTCTTTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATAGTCAGCCACGATGGAt > 4:15722/1‑148 (MQ=255) ctGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGAt > 7:175356/1‑147 (MQ=255) tGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAg > 8:71400/1‑149 (MQ=255) cAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCa < 3:189693/146‑1 (MQ=255) aaGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGccc > 1:218036/1‑149 (MQ=255) cATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCgcgc > 2:281243/1‑149 (MQ=255) aTCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTc‑g‑c‑g < 8:79655/110‑1 (MQ=255) aTCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTc‑g‑c‑g > 7:79655/1‑110 (MQ=255) gcAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGCTGGATCAGCCCGCGCCCTGc > 5:72563/1‑148 (MQ=255) cAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAACGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCa < 5:285096/149‑1 (MQ=255) gACTTCATTGATTGTTATTGTTGTCATCGCGGTC‑TCTCTGACTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGATTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCACGCGCCCTGCCAGGcccg > 6:62782/1‑147 (MQ=255) aCTTCATTTATTGTTATTGTTGCCATCGCGGGC‑TCGCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGTATCAGCCCGCGCCCTGCCAGGCCGGt < 8:169335/149‑1 (MQ=255) cTTCATTGATTGTTATTGTTGTCATCGCGGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTg > 6:264065/1‑149 (MQ=255) cATTGATTGTTATTGTTGTCATCGCGGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCACCCCGCGCCCTGCCAGGCCGGTGCAc > 5:231339/1‑149 (MQ=255) attgattgTTATTGTTGTCATCGCGGTCGTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATAAGCCCGCGCCCTGCCAGGCCGGTGCAc > 1:20213/1‑149 (MQ=255) ttgattgTTATTGTTGTCATCGCGGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCCCg > 6:143834/1‑148 (MQ=255) attgttatttttGTCATCGCGGTC‑TCTCTGTCTTAAGCGTTGCGCCATACTAAGAGCTGGATGAGGGGCATAAACGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACTTTGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACgcag < 2:218036/148‑1 (MQ=255) tattgttGTCATCGCGGTC‑TCTCTGTCTGAAGCGTTGTGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAg > 1:60156/1‑149 (MQ=255) ttgtCATCGCGGTC‑TCTATGTCTGAAGCTTTGCGCCAGACTAAGAGCTGGATGACGGGCATAAAATACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGTATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAggtgg < 6:176105/148‑1 (MQ=255) gtCATCGCGGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTc < 8:175356/148‑1 (MQ=255) aTCGCGGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAACGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAg < 3:253385/148‑1 (MQ=255) aTCGCGGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGCTGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAg > 5:13681/1‑148 (MQ=255) aTCGCGGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAg > 6:317907/1‑148 (MQ=255) aTCGCGGGC‑TCTCTGTCTGAAGCGTGGCGCCAGACTAAGAGCTGTATGACGGGCATAAAACCCGTGTTTC‑G‑CGGGCTTATCCATCGTCAGCCACTATGTATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAg < 6:130070/148‑1 (MQ=255) tCGCGGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCa < 5:328799/149‑1 (MQ=255) cgcgGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGc < 3:186647/103‑1 (MQ=255) cgcgGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGc > 4:186647/1‑103 (MQ=255) c‑tctctGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGAAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCgccg < 5:264065/149‑1 (MQ=255) tctgtctgAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCgccgagc > 1:64153/1‑149 (MQ=255) tctgAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATc > 7:117194/1‑70 (MQ=255) tctgAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATc < 8:117194/70‑1 (MQ=255) aaGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGc > 7:108536/1‑108 (MQ=255) cGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCgaga < 7:71400/149‑1 (MQ=255) cgcCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCgt < 5:317907/148‑1 (MQ=255) cAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGc > 5:152978/1‑149 (MQ=255) cAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGc < 2:60156/149‑1 (MQ=255) tAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTAAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTc > 7:13049/1‑149 (MQ=255) agagCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTcgc < 6:152978/149‑1 (MQ=255) gCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGcc > 5:31229/1‑140 (MQ=255) gtgcaggACGGGAATAAAAGAGGGCTTTCTG‑G‑GGCTTATCCTGCGTCAGGCACGAGGGATTAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGGGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTTCCGGTCGCGCAt < 5:62782/143‑1 (MQ=255) gATGACGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATTGATCAGCCCGCCCCCTGCCACGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCCGTCGCGCATGc > 8:44994/1‑148 (MQ=255) cGGGCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCAGATGa < 4:97043/149‑1 (MQ=255) gggCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTcgc > 2:251695/1‑136 (MQ=255) gggCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTcgc < 1:251695/136‑1 (MQ=255) gggCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATAAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCAGATGAc < 2:20213/149‑1 (MQ=255) ggCAGAAAAGACGTGTTTC‑GAG‑GGCTGATCCATCGGCAGCCCCGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCCGCAACAGGTGGTCAAGCAGGCGCCGCGCCGCCAGCGAGCGCGTGTGCCGGTCGCGCATGCAGATGAc > 7:250344/1‑148 (MQ=255) gCAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCAGATGACg > 3:276989/1‑148 (MQ=255) cAGAAAAGACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCAGATGACGaa > 7:192535/1‑149 (MQ=255) gACGTGTTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCAGATGACGAATTCACCa < 2:64153/149‑1 (MQ=255) gtgtTTC‑G‑CGGGCTGATCCATCGTCAGCCACGATGGCTCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGCGCCGACAGCGAGAGCGTGTGcc > 5:15452/1‑117 (MQ=255) gtgtTTC‑G‑CGGGCTGATCCATCGCCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCAGATGACGAATTCACCAAgc < 4:283670/149‑1 (MQ=255) | GCTGCTGTCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTC‑TCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑G‑C‑GGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCATGCAGATGACGAATTCACCAAGC > NC_002947/3845557‑3845842 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |