| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 1,070,248 | +GA | intergenic (+48/+94) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,070,246 | 1 | . | G | 91.5% | 143.8 / 7.5 | 48 | intergenic (+46/+96) | aroP‑I/PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Reads supporting (aligned to +/- strand): ref base . (2/2); new base G (22/21); total (24/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_002947 | 1,070,246 | 2 | . | A | 91.7% | 144.4 / 7.4 | 48 | intergenic (+46/+96) | aroP‑I/PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Reads supporting (aligned to +/- strand): ref base . (2/2); new base A (22/22); total (24/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGT‑‑GA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAAC > NC_002947/1070098‑1070384 || ccTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑Ctgt > 3:298458/1‑149 (MQ=255)ccTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑Ctgt < 2:48490/149‑1 (MQ=255) cTGAAGCCTCCTTTTCGAATCTCTGTAATGCTGATGCCTGCTTGGTTCTGTTTGCTGTGGTTGGCTTTCAATCTGAAGAATGCTCGCCAGGCCATGGGATTATCGGGTTTGTTCTTAAGGGGTATGACGTTAGGTTTTCGGCGC‑‑Ctgt‑‑g < 6:189873/149‑1 (MQ=255) gccgccGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGT‑‑Gagatc < 1:65170/149‑5 (MQ=255) gccgATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGT‑‑Gagatccag > 7:70864/1‑142 (MQ=255) cATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCAGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCcgcgc > 8:1095/1‑148 (MQ=255) cATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCAGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCcgcgc < 7:1095/148‑1 (MQ=255) aTCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCgcgg > 7:139284/1‑149 (MQ=255) tctcGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCgcggg > 5:144249/1‑149 (MQ=255) tcGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCgcgggcg > 3:62215/1‑149 (MQ=255) ggTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCgcgggcgg < 3:298536/148‑1 (MQ=255) tAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGgcgc < 3:252296/149‑1 (MQ=255) aTGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCt < 6:214303/148‑1 (MQ=255) gCTGATGCCGTCATGGATGGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGGCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGGCGCGCGGGCGGCGCTCg < 8:70864/148‑1 (MQ=255) cTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGa < 2:172607/148‑1 (MQ=255) cTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGAt > 8:117953/1‑149 (MQ=255) tCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTca > 2:190684/1‑149 (MQ=255) ggCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGAtc < 6:209455/142‑1 (MQ=255) ggCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGAtc > 5:209455/1‑142 (MQ=255) tGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTGGGTTCGTAAGGGGTCTGCCGTTAGGTTTTCGGCGC‑‑TTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGAt < 1:245318/149‑1 (MQ=38) ggATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGGGCGCCGCGCGGGCGGCGCTAGAACTCAAAGGCGCTg > 4:9851/1‑149 (MQ=255) tCGCTGTGCTGTGGGTTGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCTTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGaaa < 3:9851/149‑1 (MQ=38) tCGCTGTGCTGTGGGTTGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGaaa < 1:190684/149‑1 (MQ=255) gctgtgctgtGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCGGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGc > 5:79392/1‑149 (MQ=255) gctgtgctgtGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTTAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGc < 4:298458/149‑1 (MQ=255) gctgtgctgtGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGc > 6:265493/1‑149 (MQ=255) gctgtgctgtGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGCTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGc < 5:142657/149‑1 (MQ=255) ctgtgGGTTGCTTTCAAGCTGAAGAAGGCTCGCCAGGCAAAGGGCGGATCGGGTTTGTTCCTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATTAAAGCCTaaa < 4:313719/148‑1 (MQ=37) ggtggCTTTCAAGCTGAAGAAGTCTCGCCAGGCCAAGCGCTGATCGTGTTTGTTCGTAATGCGTATGCCGTTAGGTTTTCGGCGC‑‑CTGT‑‑GAGCTCGAGCGCCGCGCGCGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCAt < 1:103401/148‑1 (MQ=37) ggtggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATg > 1:285254/1‑149 (MQ=255) gaagaaGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCt > 4:278719/1‑148 (MQ=255) aagaagGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGa < 3:278719/149‑1 (MQ=255) ggCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGCCGCGt > 7:24215/1‑149 (MQ=255) gCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCa < 6:79392/149‑1 (MQ=255) cAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTCTGA‑‑GA‑‑TCGAGCGCCGCCCGGGCCGCGCTCCAACTCACAGGCGATGAAAGCCTAAAGGCATGCCTCTGGCGGCCCTGACGCGTTCCCCGTCCATg > 2:81261/1‑149 (MQ=255) aaGGTCTGTTCGGTTTTGTTCTTAAGGGGTATGCCGTTAGGATTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGTCGATGAAAGCCTAAATGCATGCGTCTTGCGGCCCTGACGCGTTCCCCTTCCATGc < 3:258371/149‑1 (MQ=37) cGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAtgc > 3:43277/1‑149 (MQ=255) gTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCCTTCCCCTTCCATGCCCCTCAAtgctgc > 4:100255/1‑149 (MQ=255) cGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTAGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGc > 4:252426/1‑148 (MQ=255) gggTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGAGTTCACCTTCCAAGCCCCGCAATGCTGCCTCCGCCAAccac > 3:240208/1‑149 (MQ=37) gTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAgcacgc < 7:155203/149‑1 (MQ=255) gTATGCCGTTAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAgcacg > 4:243603/1‑148 (MQ=255) cctttAGGCTTTCATCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCCGAAAACCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAgt > 3:46864/4‑149 (MQ=18) tAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGcc > 7:141880/1‑132 (MQ=255) tAGGTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGcc < 8:141880/132‑1 (MQ=255) gTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAgcacg > 2:285451/1‑136 (MQ=255) gTTTTCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAgcacg < 1:285451/136‑1 (MQ=255) ttttCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACa < 3:100255/149‑1 (MQ=255) tttCGGCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAg > 8:182038/1‑149 (MQ=255) ggCGC‑‑CTGTGAGA‑‑TCGAGCTCCGCGCGGGCGTCGCTCGATCTCACAGTCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCGATGGCCCTCAATGCTGCCTCCGCCTAGGACGCACAGTGGTGTACAGCAac < 1:81261/149‑1 (MQ=255) ggCGC‑‑CTGTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCaa < 2:285254/148‑1 (MQ=255) || CCTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTGT‑‑GA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAAC > NC_002947/1070098‑1070384 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |