Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_002947 | 4,586,030 | 2 bp→TC | intergenic (+113/+101) | PP_4061 → / ← PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,586,030 | 0 | C | T | 92.6% | 72.1 / ‑2.8 | 27 | intergenic (+113/+102) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
Reads supporting (aligned to +/- strand): ref base C (2/0); new base T (10/15); total (12/15) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.88e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
* | NC_002947 | 4,586,031 | 0 | T | C | 92.0% | 72.4 / ‑4.9 | 27 | intergenic (+114/+101) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (8/15); minor base G (2/0); total (12/15) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.50e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCCGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TCTG‑C‑GGTAAACCCGCTCCTACCA‑GGGA‑CGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAG > NC_002947/4585887‑4586113 || gccgAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCG‑C‑gg < 6:97774/149‑1 (MQ=255) ccAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCG‑CGGGTAAAc < 4:152279/149‑1 (MQ=255) cACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCAATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGTGCCGGCCTCTTCGC‑C‑GGTAAAcccccacc > 5:66281/1‑143 (MQ=255) aCCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCG‑CGGGTAAACCCCCTcag > 5:89805/1‑146 (MQ=255) gCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTAG‑CGGGTAAAACCGCTACAACCA‑ggctccg > 1:260750/1‑144 (MQ=255) tAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCG‑CGGGTAAACCCGCTCCTACCA‑GGGACCGTGCCGGCCt > 2:38719/1‑149 (MQ=39) gACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCG‑CGGGTAAACCCGCTCCTACCA‑GGGACCGTGCCGGCCtt < 4:288556/148‑1 (MQ=39) ccACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCG‑CGGGTAAACCCGCTCCTACCA‑GGGACCGTGCCGGCCTTGaa < 1:38719/149‑1 (MQ=39) gCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCG‑CGGGTAAACCCGCTCCTACCA‑GGGACCGTGCCGGCCTTGAATgcgg < 7:146011/149‑1 (MQ=39) aCCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCG‑CGGGTAAACCCGCTCCTACCA‑GGGA‑ccg > 1:247411/1‑127 (MQ=38) aCCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCG‑CGGGTAAACCCGCTCCTACCA‑GGGA‑ccg < 2:247411/129‑3 (MQ=38) ggCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCG‑CGGGTAAACCCGCTCCTACCA‑GGGACCGTGCCGGCCTTGAATGCGGCGCTg < 5:35372/149‑1 (MQ=39) gTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCG‑CGGGTAAACCCGCTCCTACCA‑GGGACCGTGCCGGCCTTGAATGCGGCGCTGccc < 3:311092/149‑1 (MQ=39) aaCAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCG‑CGGGTAAACCCGCTCCTACCA‑GGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTg < 7:229153/149‑1 (MQ=39) aGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCG‑CGGGTAAACCCGCTc > 3:178546/1‑104 (MQ=38) aGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCG‑CGGGTAAACCCGCTc < 4:178546/104‑1 (MQ=38) aGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCAC‑TTCG‑CGGGTAAAACCGCAACTAACA‑AGGACCGTGCCGGCCGTGCATTCGGCGCGGCCCCggg > 7:217654/1‑147 (MQ=255) cgcTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCG‑CGGGTAAACCCGCTCCTACCA‑GGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCgg < 1:15710/146‑1 (MQ=38) tgctCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCG‑C‑gg > 1:158276/1‑79 (MQ=255) tgctCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCG‑C‑gg < 2:158276/79‑1 (MQ=255) tgctCCATTGAAAGGTTGAGGATGACAGGGTGCTTGGCAAGGTGAAGATCTTCCATTGATCGGGCCGGCCTCATCGC‑C‑GGTAAACCCGCGCCTACCAGGGGC‑CGAGCCGGCCGTTAATTCCGGGGTGCCCCGGGTAGGAGCGGGTTTAc > 1:209703/1‑149 (MQ=255) cATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCG‑CGGGTAAACCCGCTCCTACCA‑GGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGttt > 6:269717/1‑142 (MQ=38) cATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCG‑CGGGTAAACCCGCTCCTACCA‑GGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGttt < 5:269717/142‑1 (MQ=38) tGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCG‑CGGGTAAACCCGCTCCTAcc < 7:230634/88‑1 (MQ=37) tGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCG‑CGGGTAAACCCGCTCCTAcc > 8:230634/1‑88 (MQ=37) aaaGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTA‑TTAGCC‑GGTTAAACCGCACCTACCA‑CGGACCGTGCCGGCCCTGAATTCGGCGCAGGCCCGGGTAGGAGCGGGGTTAACCCCGAaaag > 7:176012/1‑149 (MQ=255) ccGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCG‑CGGGTAAACCCGCTCCTAc < 4:311156/70‑1 (MQ=21) || GCCGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TCTG‑C‑GGTAAACCCGCTCCTACCA‑GGGA‑CGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAG > NC_002947/4585887‑4586113 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |