| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3516176 | 77 (1.090) | 9 (0.130) | 9/270 | 7.2 | 10.8% | intergenic (+216/‑919) | PP_5576/PP_5578 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | = 3516185 | 75 (1.110) | intergenic (+225/‑910) | PP_5576/PP_5578 | hypothetical protein/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTAGTTCTTTAATAACATGTTAGGTAGTATTTCGGGGCGAAAGCCCCGATGTCCCTATAAATCGTCAATTCAGAAATTGCGTCTTTCATAGGAAGGGCGCCACCTCTTTGGCAGCAATACCACAGGTCTGCACCGAAGGTGGCCACTACCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3516023‑3516176‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgctgAGGGTTTCCCAGCGGTAGTGGCCACCTTCGGTGCAGACCTGTGGTATTGCTGCCAAAGAGGTGGCGCCCTTCCTATGAAAGACGCAATTTCTGAATTGACGATTTATAGGGACATCGGGGCTTTCGCCCCGAAATACTACCTAA < NC_002947/3516185‑3516042 GTAGTTCTTTAATAACATGTTAGGTAGTATTTCGGGGCGAAAGCCCCGATGTCCCTATAAATCGTCAATTCAGAAATTGCGTCTTTCATAGGAAGGGCGCCACCTCTTTGGCAGCAATACCACAGGTCTGCACCGAAGGTGGCCACTAC > 2:143457/1‑149GTAGTTCTTTAATAACATGTTAGGTAGTATTTCGGGGCGAAAGCCCCGATGTCCCTATAAATCGTCAATTCAGAAATTGCGTCTTTCATAGGAAGGGCGCCACCTCTTTGGCAGCAATACCACAGGTCTGCACCGAAGGTGGCCACTAC > 2:148211/1‑149 TAGTTCTTTAATAACATGTTAGGTAGTATTTCGGGGCGAAAGCCCCGATGTCCCTATAAATCGTCAATTCAGAAATTGCGTCTTTCATAGGAAGGGCGCCACCTCTTTGGCAGCAATACCACAGGTCTGCACCGAAGGTGGCCACTACC > 2:391051/1‑149 TTCTTTAATAACATGTTAGGTAGTATTTCGGGGCGAAAGCCCCGATGTCCCTATAAATCGTCAATTCAGAAATTGCGTCTTTCATAGGAAGGGCGCCACCTCTTTGGCAGCAATACCACAGGTCTGCACCGAAGGTGGCCACTACCGCT > 3:407452/1‑149 GTAGTATTTCGGGGCGAAAGCCCCGATGTCCCTATAAATCGTCAATTCAGAAATTGCGTCTTTCATAGGAAGGGCGCCACCTCTTTGGCAGCAATACCACAGGTCTGCACCGAAGGTGGCCACTACCGCTGAGGGTTTCCCAGCGGTAG > 3:285243/1‑149 tatTATTTCGGGGCTAAAGCCCCGATGTCCCTATAAATCGTCAATTCAGAAATTGCGTCTTTCATAGGAAGGGCGCCACCTCTTTGGCAGCAATACCACAGGTCTGCACCGAAGGTGGCCACTACCGCTGAGGGTTTCCCAGCGGTAG < 3:347562/145‑1 TATTTCGGGGCGAAAGCCCCGATGTCCCTATAAATCGTCAATTCAGAAATTGCGTCTTTCATAGGAAGGGCGCCACCTCTTTGGCAGCAATACCACAGGTCTGCACCGAAGGTGGCCACTACCGCTGAGGGTTTCCCAGCGGTAGTGGC < 4:285243/149‑1 AAAGCCCCGATGTCCCTATAAATCGTCAATTCAGAAATTGCGTCTTTCATAGGAAGGGCGCCACCTCTTTGGCAGCAATACCACAGGTCTGCACCGAAGGTGGCCACTACCGCTGAGGGTTTCCCAGCGGTAGTG > 5:119457/1‑135 AAAGCCCCGATGTCCCTATAAATCGTCAATTCAGAAATTGCGTCTTTCATAGGAAGGGCGCCACCTCTTTGGCAGCAATACCACAGGTCTGCACCGAAGGTGGCCACTACCGCTGAGGGTTTCCCAGCGGTAGTG < 6:119457/135‑1 GCGTCTTTCATAGGAAGGGCGCCACCTCTTTGGCAGCAATACCACAGGTCTGCACCGAAGGTGGCCACTACCGCTGAGGGTTTCCCAGCGGTAGTGGCCACCTTCGGTG > 3:346125/1‑109 GCGTCTTTCATAGGAAGGGCGCCACCTCTTTGGCAGCAATACCACAGGTCTGCACCGAAGGTGGCCACTACCGCTGAGGGTTTCCCAGCGGTAGTGGCCACCTTCGGTG < 4:346125/109‑1 AAGGGCGCCACCTCTTTGGCAGCAATACCACAGGTCTGCACCGAAGGTGGCCACTACCGCTGAGGGTTTCCCAGCGGTAGTGG < 7:326373/83‑1 AAGGGCGCCACCTCTTTGGCAGCAATACCACAGGTCTGCACCGAAGGTGGCCACTACCGCTGAGGGTTTCCCAGCGGTAGTGG > 8:326373/1‑83 CCGCTGAGGGTTTCCCAGCGGTAGTGGCCACCTTCGGTGCAGACCTGTGGTATTGCTGCCAAAGAGGTGGCGCCCTTCCTATGAAAGACGCAATTTCTGAATTGACGATTTATAGGGACATCGGGGCTTTCGCCCCGAAATACTACCT > 2:332967/1‑148 GCTGAGGGTTTCCCAGCGGTAGTGGCCACCTTCGGTGCAGACCTGTGGTATTGCTGCCAAAGAGGTGGCGCCCTTCCTATGAAAGACGCAATTTCTGAATTGACGATTTATAGGGACATCGGGGCTTTCGCCCCGAAATACTACCTAA > 1:226128/1‑148 GCTGAGGGTTTCCCAGCGGTAGTGGCCACCTTCGGTGCAGACCTGTGGTATTGCTGCCAAAGAGGTGGCGCCCTTCCTATGAAAGACGCAATTTCTGAATTGACGATTTATAGGGACATCGGGGCTTTCGCCCCGAAATACTACCTAA < 2:226128/148‑1 GTAGTTCTTTAATAACATGTTAGGTAGTATTTCGGGGCGAAAGCCCCGATGTCCCTATAAATCGTCAATTCAGAAATTGCGTCTTTCATAGGAAGGGCGCCACCTCTTTGGCAGCAATACCACAGGTCTGCACCGAAGGTGGCCACTACCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3516023‑3516176‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgctgAGGGTTTCCCAGCGGTAGTGGCCACCTTCGGTGCAGACCTGTGGTATTGCTGCCAAAGAGGTGGCGCCCTTCCTATGAAAGACGCAATTTCTGAATTGACGATTTATAGGGACATCGGGGCTTTCGCCCCGAAATACTACCTAA < NC_002947/3516185‑3516042 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |