Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947196,3270AC21.3% 276.6 / 69.0 137T611T (ACA→ACC) PP_0168putative surface adhesion protein
Reads supporting (aligned to +/- strand):  ref base A (49/58);  new base C (8/21);  total (57/80)
Fisher's exact test for biased strand distribution p-value = 9.20e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 141 total aligned reads displayed.

ACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG  >  NC_002947/196181‑196474
                                                                                                                                                    |                                                                                                                                                    
aacccGAACCTGACGCCTGCTCAGACCACGATCAACGACTCGGTCGAGACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAT‑TCCTGCCCAGAAGCCGGTGACa                                                                                                                                                      <  4:208915/145‑1 (MQ=11)
   ccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGAc                                                                                                                                                 >  2:73550/1‑149 (MQ=39)
    cGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGAcc                                                                                                                                                <  3:368754/149‑1 (MQ=39)
    cGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGAcc                                                                                                                                                <  7:127134/149‑1 (MQ=39)
    cGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGAcc                                                                                                                                                <  7:186918/149‑1 (MQ=39)
    cGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGAcc                                                                                                                                                >  1:401904/1‑149 (MQ=39)
      aaCCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCt                                                                                                                                              <  5:358203/149‑1 (MQ=39)
         ccGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTc                                                                                                                                           >  7:335621/1‑149 (MQ=39)
           gACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTcc                                                                                                                                          >  6:200665/1‑148 (MQ=39)
             cGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCaa                                                                                                                                        <  4:200771/148‑1 (MQ=39)
             cGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAAc                                                                                                                                       <  6:78826/149‑1 (MQ=39)
                cGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGc                                                                                                                                    <  1:167882/149‑1 (MQ=39)
                 ggCTCAGACCACGATCAACGACTCTGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGcc                                                                                                                                   <  4:379529/149‑1 (MQ=255)
                   cTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCa                                                                                                                                  >  4:12338/1‑148 (MQ=39)
                         ccACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAt                                                                                                                            >  7:89647/1‑148 (MQ=39)
                          cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTa                                                                                                                          <  7:37505/149‑1 (MQ=39)
                          cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTa                                                                                                                          >  7:38966/1‑149 (MQ=39)
                              aTCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGt                                                                                                                      <  1:73550/149‑1 (MQ=39)
                               tCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCg                                                                                                                       >  5:26718/1‑147 (MQ=39)
                                cAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt                                                                                                                     >  3:66566/1‑148 (MQ=39)
                                cAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt                                                                                                                     >  3:100658/1‑148 (MQ=39)
                                 aaCGACTCGGTCGACACCACTACCGCGCCCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGACCAACGGCCAAACCATTACCGTTg                                                                                                                    >  7:17738/1‑148 (MQ=255)
                                 aaCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAACTCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt                                                                                                                     <  1:326029/148‑1 (MQ=255)
                                 aaCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTg                                                                                                                    >  6:66027/1‑148 (MQ=39)
                                 aaCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTg                                                                                                                    <  4:409028/148‑1 (MQ=39)
                                  aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCa                                                                                                                             <  2:381722/138‑1 (MQ=40)
                                  aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa                                                                                                                  <  1:38868/149‑1 (MQ=39)
                                     aCTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGcc                                                                                                               >  5:249709/1‑149 (MQ=39)
                                      cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCg                                                                                                              <  6:119482/149‑1 (MQ=39)
                                      cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCg                                                                                                              >  2:46489/1‑149 (MQ=39)
                                         ggTCGACACCACTACCGCGACCCTGACGGCGAGCCAGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑ACCTGCCCAGACGCCGCTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAACCCGGc                                                                                                            >  5:205083/1‑148 (MQ=255)
                                             gACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaaga                                                                                                        <  5:39974/148‑3 (MQ=25)
                                             gACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaaaa                                                                                                        <  5:200665/148‑1 (MQ=39)
                                             gACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAc                                                                                                       >  7:31054/1‑149 (MQ=25)
                                             gACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAAc                                                                                                       <  7:9841/149‑1 (MQ=40)
                                              acacCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAACCCGGCAAGAcc                                                                                                      >  3:154012/1‑149 (MQ=21)
                                                accacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCa                                                                                                    <  5:66027/149‑1 (MQ=17)
                                                 ccacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAg                                                                                                   <  5:76183/149‑1 (MQ=37)
                                                 ccacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAg                                                                                                   <  4:66566/149‑1 (MQ=37)
                                                  cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt                                                                                                                     >  6:345199/1‑130 (MQ=35)
                                                  cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAg                                                                                                   <  6:244686/148‑1 (MQ=17)
                                                  cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAgg                                                                                                  >  6:156450/1‑149 (MQ=37)
                                                  cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAgg                                                                                                  >  1:64242/1‑149 (MQ=37)
                                                   accaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCTA‑CCCTGCCCAGACGCCGGGGACGGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAggg                                                                                                 <  6:278574/146‑1 (MQ=11)
                                                   accaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑CCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAggg                                                                                                 <  6:165857/146‑1 (MQ=0)
                                                   accaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑CCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAggg                                                                                                 >  6:30595/4‑149 (MQ=0)
                                                   acTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAggg                                                                                                 >  4:293433/1‑149 (MQ=17)
                                                   acTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAggg                                                                                                 >  3:326688/1‑149 (MQ=17)
                                                   acTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAggg                                                                                                 <  1:46489/149‑1 (MQ=17)
                                                    cTACCGCGACCCTGACTGCGCGCCCGTCGGTCACCGACGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCTAACCATTACCGTTGAAGCCGGCAAAACCCAGGGc                                                                                                <  8:89647/149‑1 (MQ=255)
                                                       ccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑CCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGc                                                                                             <  8:64336/149‑1 (MQ=12)
                                                        cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCg                                                                                                              >  7:83998/1‑131 (MQ=32)
                                                        cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCg                                                                                                              <  8:83998/131‑1 (MQ=32)
                                                         gcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑CCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGt                                                                                           <  4:307193/149‑1 (MQ=12)
                                                          cgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTc                                                                                          <  2:381736/149‑1 (MQ=34)
                                                          cgACCCTGACGGCGAGCCCGTCGGTCACCCTAGGCGGCGTGATCACTTACTCCGTGAC‑CCTGAGCAA‑CCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTc                                                                                          <  2:115476/149‑1 (MQ=11)
                                                            aCCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑CCGTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGa                                                                                        <  3:143095/149‑1 (MQ=255)
                                                                tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTCCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAAACATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATATc                                                                                    >  6:23564/1‑149 (MQ=255)
                                                                  aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTc                                                                                    <  2:29891/147‑1 (MQ=34)
                                                                    ggCGAGCCCGTCGGTCACCTAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAT‑TCCTGCCCAGACGCGGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACGGTTGAAGCCGTCAAAACCCAGGGCTGCGTCTATTTCCAGa                                                                                <  6:82933/149‑1 (MQ=11)
                                                                       gAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa                                                                                  >  5:83821/1‑144 (MQ=34)
                                                                        aGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑CCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGAcccc                                                                            <  1:167581/149‑1 (MQ=255)
                                                                         gCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑CCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCg                                                                           <  5:325968/149‑1 (MQ=255)
                                                                          cccGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑CCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCgg                                                                          <  4:63464/149‑1 (MQ=255)
                                                                              tCGGTCACCGAAGGCGGCGTGATCACTTCCACCGTGAC‑CCTGAGCAA‑CCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGaa                                                                      <  4:120595/149‑1 (MQ=11)
                                                                                ggTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑Tg                                                                   <  8:335070/149‑1 (MQ=34)
                                                                                 gTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑CCCTGCCCAGACGCCGGTGACCGTGACCCTGTCAAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCa                                                                                                    >  4:257442/1‑116 (MQ=11)
                                                                                  tCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑CCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGAc                                                                 <  1:223474/149‑1 (MQ=255)
                                                                                  tCACCGAAGGCGGCGTGATCACTTACACCGAGAC‑CCTGAGCAA‑CCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGAc                                                                 <  8:113935/149‑1 (MQ=11)
                                                                                     ccGAAGGCGGCGTGATCACTTACACCGTGACACCTTAGCAA‑CCCTGCCCAGACGCCGGTGACCTTGACCCTGTCCAACGGCCAAACGATTACCTTTGAAGCCGGCAAAACCCAGTGCAGCGTCGACTTCCAGCCCCCGGCGAA‑TGAct                                                                >  1:257825/1‑147 (MQ=11)
                                                                                      cGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTc                                                              >  3:293575/1‑148 (MQ=34)
                                                                                      cGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑CCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTc                                                                                          >  3:340264/1‑121 (MQ=12)
                                                                                      cGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑CCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTc                                                                                          <  4:340264/121‑1 (MQ=12)
                                                                                      cGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑CCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGAc                                                                 <  6:131463/145‑1 (MQ=255)
                                                                                      cGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑CCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGAc                                                                 >  5:131463/1‑145 (MQ=255)
                                                                                       gAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑CCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGACGTCTa                                                            <  3:399291/149‑1 (MQ=255)
                                                                                       gAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑CCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGACGTCTa                                                            <  1:317910/149‑1 (MQ=255)
                                                                                          ggcggcGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTacaa                                                         <  2:178396/149‑1 (MQ=34)
                                                                                           gcggcgTGATCAATTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTacaac                                                        <  4:293575/149‑1 (MQ=21)
                                                                                             ggcgTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGACCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTAcaacaa                                                      <  8:17738/149‑1 (MQ=21)
                                                                                                 tGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGt                                                  <  5:156450/149‑1 (MQ=34)
                                                                                                       cTTACACCGTGAC‑CCTGAGCAA‑CCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACt                                            <  2:45940/149‑1 (MQ=255)
                                                                                                       cTTACACCGTGAC‑CCTGAGCAA‑CCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACt                                            <  3:195409/149‑1 (MQ=255)
                                                                                                           cacCGTGAC‑CCTGAGCAA‑CCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCa                                        <  6:87509/149‑1 (MQ=255)
                                                                                                            acCGTGAC‑CCTGAGCAA‑CCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGt                                          >  8:343492/1‑146 (MQ=255)
                                                                                                            acCGTGAC‑CCTGAGCAA‑CCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCa                                        <  7:343492/148‑1 (MQ=255)
                                                                                                             ccGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTGGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAgt                                      <  6:26718/149‑1 (MQ=25)
                                                                                                              ggcgctaccTGTGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAgt                                      <  7:239971/142‑1 (MQ=255)
                                                                                                                tGAC‑GCTGAGCAA‑TGCTGCCGAGTCGCCGGTGACAGTGACCCTGTCCAACGTCCAAACCATTACCTTTGAAGGCGGCAAAACCCATGGCTGCTTCGATTTCCAGACCCCGGCGAA‑TGACGTCTTCAACAACGGTTCGACTGTCAGTGTc                                   <  5:23564/149‑1 (MQ=11)
                                                                                                                         aGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATc                             <  8:335621/147‑1 (MQ=37)
                                                                                                                           cAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCa                                        >  7:291436/1‑134 (MQ=34)
                                                                                                                                 cTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTGTCCATCGAGAACGc                     >  1:354721/1‑148 (MQ=255)
                                                                                                                                    cccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAACTGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCAc                  <  1:104187/149‑1 (MQ=255)
                                                                                                                                       aGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAACCGGCAAAACCCAGGGCACCGTCGATTTCCACACCCCGGCGAA‑TGACGTCTACCACAACGGATCGACAGTCAGTGTCACCATCGACAACGCCACcggc              >  4:174936/1‑149 (MQ=11)
                                                                                                                                        gACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggcg             <  8:270398/149‑1 (MQ=39)
                                                                                                                                              ggTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCa                                        >  7:6541/1‑116 (MQ=35)
                                                                                                                                              ggTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCa                                        <  8:6541/116‑1 (MQ=35)
                                                                                                                                              ggTGACAGTGAACCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCAGGCCAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCAACATCGAGAACGCCACCGGCGGTAAtt       >  8:13156/1‑149 (MQ=255)
                                                                                                                                                   cAGTGACACTGTCCAACGGCCATACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa   <  3:174936/148‑1 (MQ=255)
                                                                                                                                                    aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCga                           <  4:382404/123‑1 (MQ=35)
                                                                                                                                                    |                                                                                                                                                    
ACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAA‑TCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG  >  NC_002947/196181‑196474

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑