| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 196,390 | 0 | T | C | 28.9% | 125.8 / 62.5 | 90 | D632D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (32/32); new base C (7/19); total (39/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.08e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.25e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCAC > NC_002947/196245‑196536 | tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAATCCTCCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAAACATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATATc > 6:23564/1‑149 (MQ=255) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTc < 2:29891/147‑1 (MQ=34) ggCGAGCCCGTCGGTCACCTAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCATTCCTGCCCAGACGCGGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACGGTTGAAGCCGTCAAAACCCAGGGCTGCGTCTATTTCCAGa < 6:82933/149‑1 (MQ=11) gCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAc < 3:12338/149‑1 (MQ=34) gAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa > 5:83821/1‑144 (MQ=34) gAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 6:83821/144‑1 (MQ=34) aGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGAcccc < 1:167581/149‑1 (MQ=255) gCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCg < 5:325968/149‑1 (MQ=255) cccGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCgg < 4:63464/149‑1 (MQ=255) cccGTCGGACACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCgg > 4:399291/1‑149 (MQ=11) tCGGTCACCGAAGGCGGCGTGATCACTTCCACCGTGAC‑CCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGaa < 4:120595/149‑1 (MQ=11) cGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGaac < 5:12602/149‑2 (MQ=255) ggTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑t < 2:64242/148‑1 (MQ=34) ggTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑Tg < 8:335070/149‑1 (MQ=34) tCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGAc < 1:223474/149‑1 (MQ=255) tCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGAc < 5:30595/149‑1 (MQ=255) tCACCGAAGGCGGCGTGATCACTTACACCGAGAC‑CCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGAc < 8:113935/149‑1 (MQ=11) ccGAAGGCGGCGTGATCACTTACACCGTGACACCTTAGCAACCCTGCCCAGACGCCGGTGACCTTGACCCTGTCCAACGGCCAAACGATTACCTTTGAAGCCGGCAAAACCCAGTGCAGCGTCGACTTCCAGCCCCCGGCGAA‑TGAct > 1:257825/1‑147 (MQ=11) cGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTc > 6:298938/1‑148 (MQ=34) cGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTc > 3:293575/1‑148 (MQ=34) cGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGAc < 6:131463/145‑1 (MQ=255) cGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGAc > 5:131463/1‑145 (MQ=255) gAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTa > 3:190189/1‑149 (MQ=34) gAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGACGTCTa < 3:399291/149‑1 (MQ=255) gAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGACGTCTa < 1:317910/149‑1 (MQ=255) aaGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGACGAA‑TGACGTCTac < 2:401904/149‑1 (MQ=21) ggcggcGTGATCACTTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTacaa < 2:178396/149‑1 (MQ=34) gcggcgTGATCAATTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTacaac < 4:293575/149‑1 (MQ=21) ggcgTGATCACTTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTCGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGt > 7:65911/1‑140 (MQ=21) ggcgTGATCACTTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTCGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGt < 8:65911/140‑1 (MQ=21) ggcgTGATCACTTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGACCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTAcaacaa < 8:17738/149‑1 (MQ=21) tGATCACTTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGt < 5:156450/149‑1 (MQ=34) cTTACACCGTGAC‑CCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACt < 2:45940/149‑1 (MQ=255) cTTACACCGTGAC‑CCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACt < 3:195409/149‑1 (MQ=255) cacCGTGAC‑CCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCa < 6:87509/149‑1 (MQ=255) acCGTGAC‑CCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGt > 8:343492/1‑146 (MQ=255) acCGTGAC‑CCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCa < 7:343492/148‑1 (MQ=255) ccGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTGGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAgt < 6:26718/149‑1 (MQ=25) ggcgctaccTGTGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAgt < 7:239971/142‑1 (MQ=255) tGAC‑GCTGAGCAATGCTGCCGAGTCGCCGGTGACAGTGACCCTGTCCAACGTCCAAACCATTACCTTTGAAGGCGGCAAAACCCATGGCTGCTTCGATTTCCAGACCCCGGCGAA‑TGACGTCTTCAACAACGGTTCGACTGTCAGTGTc < 5:23564/149‑1 (MQ=11) c‑ccTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAG‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCAc > 7:270398/1‑148 (MQ=37) aGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATc < 8:335621/147‑1 (MQ=37) aGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCg < 4:190189/148‑1 (MQ=37) cAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCa < 8:291436/134‑1 (MQ=34) cAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCa > 7:291436/1‑134 (MQ=34) aTCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAAc < 8:38966/149‑1 (MQ=37) cTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTGTCCATCGAGAACGc > 1:354721/1‑148 (MQ=255) cccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAACTGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCAc < 1:104187/149‑1 (MQ=255) aGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAACCGGCAAAACCCAGGGCACCGTCGATTTCCACACCCCGGCGAA‑TGACGTCTACCACAACGGATCGACAGTCAGTGTCACCATCGACAACGCCACcggc > 4:174936/1‑149 (MQ=11) gACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggcg < 8:270398/149‑1 (MQ=39) ggTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCa < 8:6541/116‑1 (MQ=35) ggTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCa > 7:6541/1‑116 (MQ=35) ggTGACAGTGAACCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCAGGCCAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCAACATCGAGAACGCCACCGGCGGTAAtt > 8:13156/1‑149 (MQ=255) accgTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑t > 5:413015/4‑84 (MQ=1) accgTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑t < 6:413015/81‑1 (MQ=1) cAGTGACACTGTCCAACGGCCATACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa < 3:174936/148‑1 (MQ=255) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCga < 4:382404/123‑1 (MQ=35) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCga > 3:382404/1‑123 (MQ=35) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAg > 6:119983/1‑148 (MQ=38) gTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGACGTCt < 1:24444/88‑1 (MQ=255) gTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGACGTCt > 2:24444/1‑88 (MQ=255) gTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGACGTCt > 2:17690/1‑88 (MQ=255) gTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑TGACGTCt < 1:17690/88‑1 (MQ=255) gTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAccc > 5:167883/1‑149 (MQ=37) cAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACTACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGa < 5:298938/149‑1 (MQ=37) cAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCg > 8:195123/1‑148 (MQ=37) cAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATAGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCg > 1:167190/1‑148 (MQ=37) aaCGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGaa > 7:179630/1‑149 (MQ=37) aaCGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAA‑t < 1:329292/69‑1 (MQ=255) cAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAc > 3:322797/1‑149 (MQ=39) aCCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCCCCGGCGGGAATTTCGCGCCACTGACCCCGCATCCGACGcc > 5:306072/1‑149 (MQ=14) aCCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGcc > 5:29468/1‑149 (MQ=39) ccATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAccc > 7:284909/1‑135 (MQ=37) ccATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAccc < 8:284909/135‑1 (MQ=37) cGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGa > 2:390144/1‑149 (MQ=39) cGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGa > 2:93197/1‑149 (MQ=39) ttGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCgaga < 2:192087/93‑1 (MQ=37) ttGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCgaga > 1:192087/1‑93 (MQ=37) gCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGAt > 2:131746/1‑149 (MQ=39) gCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACGGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGAt < 6:29468/149‑1 (MQ=37) ccGGCAAAACCAAGGGCAGCGTCGATTTCAAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGAt > 6:332519/1‑148 (MQ=255) cAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACg > 3:291559/1‑149 (MQ=39) cccAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCCCAGACCACGATCAACGACTCg > 4:399528/1‑149 (MQ=255) aGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTc > 2:341520/1‑149 (MQ=39) aGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCCCCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGc < 1:131746/149‑1 (MQ=255) aGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGc < 8:179630/149‑1 (MQ=39) gCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGcc < 7:195123/149‑1 (MQ=39) cGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGcca > 2:95/1‑149 (MQ=39) cGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGcca < 4:322797/149‑1 (MQ=39) gATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCcaccac > 8:242023/1‑149 (MQ=39) | TGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAC‑CCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAA‑TGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCAC > NC_002947/196245‑196536 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |