| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,282,775 | 0 | G | C | 30.0% | 90.4 / 53.7 | 70 | intergenic (‑167/+62) | PP_2010/PP_2011 | cytochrome b561/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (30/19); new base C (11/10); total (41/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.99e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.27e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAG > NC_002947/2282628‑2282923 | gTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGACATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCACTTCCCTGGCACGCCCGCTCCCACAGTCCAACTGCACACTCTTgg > 3:90296/1‑148 (MQ=255) tGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGc > 3:231203/1‑149 (MQ=255) aTGGCGCTCTTGGTGGCGCTCAGGAGTCATTTTTATGGCTACCGTAAACATATCTTTGCGACAGGTCTGTGAAAAATGTGTTTCCAGCCACCGTACTCTTCGCTGTCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCtg < 6:2847/149‑1 (MQ=255) tGGCGCTCTTGCTGGCGTTCATGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCtgt < 7:383640/149‑1 (MQ=255) cgcTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTGCa < 5:264687/149‑1 (MQ=255) cgcTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTGCa < 3:254675/149‑1 (MQ=255) gcTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAg > 5:336571/1‑149 (MQ=255) gcTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTGCAg < 4:179968/149‑1 (MQ=25) ctctTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCt < 8:280194/142‑1 (MQ=255) ctctTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCt > 7:280194/1‑142 (MQ=255) gCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTGCAGTT‑gg < 8:191216/147‑1 (MQ=255) gCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTGCAGTT‑g < 5:89540/146‑1 (MQ=255) gcTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCATGGAAGCCGGTGGAAAT‑GGACTGTgg > 1:354491/1‑148 (MQ=39) cATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGATAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCAAACTCCAACTCCACCGTCATGGAAGAGGGTGCAGTT‑GGACTGTGGGAGCCGGC‑gag > 5:297048/1‑147 (MQ=255) ttttAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTGCAGt > 5:415828/1‑126 (MQ=255) ttttAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTGCAGt < 6:415828/126‑1 (MQ=255) gCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGaacg > 2:320910/1‑147 (MQ=255) cTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAggg > 3:153287/1‑149 (MQ=255) tACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGGAGGT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAgggg > 5:30353/1‑149 (MQ=255) aCCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCCCAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGc < 5:211380/149‑1 (MQ=255) ccGGAAACAGTTCTTTGCGCCAGGTCTGTGAAAAATGGGTTGCCAGCCCCCGGCCTCTTCGCTGGCACGCCCGCTCCCACTGTCCAACTGCACAGTCTTGGATGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAgggg < 4:90296/147‑1 (MQ=25) ccGGAAACAGATCTTTGCGCCAGGTCTGTGAAAACTGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAgggg < 1:319087/147‑1 (MQ=255) ccGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGCGCGGGC‑GTGCC‑CGCGAAGGGGcc > 1:363043/1‑149 (MQ=255) gAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCGGTGGAGTT‑GGAGTGTGGGGGCGGGC‑GTGCC‑GGCGAAGGGGCCg > 6:228173/1‑147 (MQ=25) actgATCTTTGCGCCAGGGCTGTTAAAATTGTGTTGCCAGCCACCGGCCTCTTCGCGGGCACGCCCGCTCCCACAGTCCAACTGCACTGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCa < 6:220645/146‑1 (MQ=21) aCAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCa < 4:153287/149‑1 (MQ=255) aGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGTAgg > 3:322009/1‑149 (MQ=255) cTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGa > 1:273663/1‑148 (MQ=255) ctcgtggTCTGTTAAAATTGTGTTGCCAGCCTCCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCTACTGAACAGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCa < 6:297048/143‑1 (MQ=21) cgcCAGGTCTGTGAAAAATGTCTTCCCAGCCCCCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTCCACAGTCTTGCAAGCCTGGGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCa < 7:58739/148‑1 (MQ=21) cAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGCCATCAGTTa > 3:16552/1‑149 (MQ=255) gtgAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTGGGAAGGCTGTGGGGGT‑GGGCTGGGGGAGCGGGC‑GTGCC‑CGGGAAGGGGCCGG‑AGCAGGCGGCATCAGTTACCggg > 1:56536/1‑147 (MQ=25) tgAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCggg > 3:356008/1‑146 (MQ=255) tgAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTGCAGtt > 2:357541/1‑87 (MQ=17) aaaaaTGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGAt > 5:121893/1‑149 (MQ=255) aaaaaTGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTGCAGtt < 6:322653/85‑1 (MQ=17) aaaaaTGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTGCAGtt > 5:322653/1‑85 (MQ=17) aaaaTGT‑TTCCCACCCACCGGCCCCATCCCCGGCACGCCCCCCCCCCCCCTCCAACTGCACACTCCTGGAAGCCTGTGCAGTT‑TGACTGTGGGTGCGGGC‑GTGCCTCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATa < 1:293570/149‑1 (MQ=255) ttGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGCTCTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCa < 1:320910/148‑1 (MQ=255) ttGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGTAGGCGACATCAGTTACCGGGCAGATAGGGCCAg < 4:322009/148‑1 (MQ=255) caCCGGCCTCTTCGCTGGCACGCCCGCACCCACAGTACAACAGCACAGTCATGGAAGCCAGTGCAGTT‑GTACAGTTGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCCG‑AGCAGGCGACATCAGTTAACGGGCAGATAAGGCCAGTCAAcacc > 4:366299/1‑148 (MQ=255) ccTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTT‑g > 7:66612/1‑63 (MQ=255) ccTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTT‑g < 8:66612/63‑1 (MQ=255) ttCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑GGCAGGCGACATGCGTTACCGGGCAGATAGGGCCAGTCATCCCCCACCAGAAaca > 7:27273/1‑149 (MQ=255) cACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCt < 2:363043/149‑1 (MQ=255) cACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCt > 4:296273/1‑149 (MQ=255) aCGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGCTAGGGCCAGGCATCACCCACCAGCAACACCCGTTCTg > 3:298467/1‑149 (MQ=21) cGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGc < 3:366299/149‑1 (MQ=255) gCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGcc < 4:231203/149‑1 (MQ=255) gCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGcc > 3:357923/1‑149 (MQ=255) cacaGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACA‑CCGTTCTGCCTCCTGCCAgg > 4:352586/1‑149 (MQ=255) cacaGGCCAACTGCACCGGCTGCCACGACTGGGCAGTT‑GGACGGTGGGAGCGGGC‑GTGCC‑AGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAg < 3:144858/149‑1 (MQ=25) acaGTCCAACTGCACAGGCTTCCAAGACTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑AGCGAAGAGGCCGGTGGCTGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAg > 3:203776/1‑149 (MQ=18) tCCAACTGCACAGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCAc > 6:209396/1‑148 (MQ=255) aaCTGCACAGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATc > 2:262412/1‑149 (MQ=255) aaCTGCACAGGCTTCCAAGACTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGc > 1:323366/1‑131 (MQ=255) aaCTGCACAGGCTTCCAAGACTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGc < 2:323366/131‑1 (MQ=255) aaCTGCACAGGCTTCCAAGACTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑AGCGAAGAGGCCGGTGGCTGGCAACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCAt > 5:349302/1‑149 (MQ=18) cTGCACAGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACA‑CCGTTCTGCCTCCTGCCAGGCACCATCGGc < 3:352586/149‑1 (MQ=255) tGCACAGGCTTCCAAGACTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCgg > 4:376520/1‑148 (MQ=255) tGCACAGGCTTCCAAGACTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑AGCGAAGAGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCgg > 5:164374/1‑148 (MQ=25) gCACAGGCTTCCAAGACTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCa > 4:7785/1‑149 (MQ=255) cacaGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCCGGCGACATCAGTTACCGGGCAGCTAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACAATCGGCa > 6:332655/1‑148 (MQ=255) cacaGGCTTCCAAGACTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCAt > 2:359555/1‑149 (MQ=255) acaGTCTTGGAAGCCTGTGCAGTTGGGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCAt > 1:6519/1‑149 (MQ=255) caGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCAt > 6:352655/1‑147 (MQ=255) aGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATcacccac > 5:172679/1‑105 (MQ=255) aGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATcacccac < 6:172679/105‑1 (MQ=255) aGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAg > 5:106272/1‑149 (MQ=255) ttGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCa < 4:178979/79‑1 (MQ=255) ttGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCa > 3:178979/1‑79 (MQ=255) ggAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCAc > 6:87631/1‑147 (MQ=255) ggAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCAc < 5:209396/147‑1 (MQ=255) ggAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACAACCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCAc < 6:336571/147‑1 (MQ=255) gAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAg > 5:207001/1‑149 (MQ=255) | GTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTT‑GGACTGTGGGAGCGGGC‑GTGCC‑CGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAG > NC_002947/2282628‑2282923 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |