Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,949,108 Δ1 bp 7.9% coding (426/642 nt) PP_3485 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,949,1080T. 7.9% 194.2 / 10.4 63coding (426/642 nt)PP_3485hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (30/28);  new base . (2/3);  total (32/31)
Fisher's exact test for biased strand distribution p-value = 6.72e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CCGCTGCCCGATGAGCGTTGCCCGAGCCAAGGCCAGGCCGTGTTCGCGTATGACCAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGCCCGCCTCTGCCAGTCGCCTTTCGAATAACGCCGGGCTGCCAAATGCCGCTTCGATCTCGCCAACCTGCGCC  >  NC_002947/3948961‑3949255
                                                                                                                                                     |                                                                                                                                                    
ccGCTGCCCGATGAGCGTTGCCCGAGCCAAGGCCAGGCCGTGTTCGCGTATGACCAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTg                                                                                                                                                     >  4:73349/1‑149 (MQ=255)
             aGCGTTGCCCGAGCCAAGGCCAGGCCGTGTTCGCGTATGACCAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTGCTCAGCGCAGTCGACGCGCCGAGcgaggg                                                                                                                                        <  3:101655/148‑6 (MQ=38)
              gCGTTGCCCGAGCCAAGGCCAGGCCGTGTTCGCGTATGACCAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCg                                                                                                                                      >  7:194278/1‑149 (MQ=255)
                    cccGAGCCAAGGCCAGGCCGTGTTCGCGTATGACCAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTGCTCAGCGCAGTCGACGCGCCGAGCGAGGGc                                                                                                                                       >  2:171101/1‑142 (MQ=38)
                    cccGAGCCAAGGCCAGGCCGTGTTCGCGTATGACCAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTGCTCAGCGCAGTCGACGCGCCGAGCGAGGGc                                                                                                                                       <  1:171101/142‑1 (MQ=38)
                     ccGAGCCAAGGCCAGGCCGTGTTCGCGTATGACCAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACtt                                                                                                                               >  7:235790/1‑149 (MQ=255)
                      cGAGCCAAGGCCAGGCCGTGTTCGCGTATGACCAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTGCTCAGCGCAGTCGACGCGCCGAGcgaggg                                                                                                                                        >  5:238533/1‑134 (MQ=38)
                      cGAGCCAAGGCCAGGCCGTGTTCGCGTATGACCAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTGCTCAGCGCAGTCGACGCGCCGAGcgaggg                                                                                                                                        <  6:238533/139‑6 (MQ=38)
                       gAGCCAAGGCCAGGCCGTGTTCGCGTATGACCAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGc                                                                                                                             <  3:73349/149‑1 (MQ=255)
                         gCCAAGGCCAGGCCGTGTTCGCGTATGACCAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCACTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTg                                                                                                                           >  8:29941/1‑149 (MQ=255)
                          ccAAGGCCAGGCCGTGTTCGCGTATGACCAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTgg                                                                                                                          <  7:29941/149‑1 (MQ=255)
                          ccAAGGCCAGGCCGTGTTCGCGTATGACCAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTgg                                                                                                                          <  4:191939/149‑1 (MQ=255)
                            aaGGCCAGGCCGTGTTCGCGTATGACCAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGgc                                                                                                                        >  6:233854/1‑149 (MQ=255)
                             aggccaggccGTGTTCGCGTATGACCAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGgcc                                                                                                                       <  3:283365/149‑1 (MQ=255)
                                  aggccGTGTTCGCGTATGACCAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCAt                                                                                                                  <  8:235790/149‑1 (MQ=255)
                                    gccGTGTTCGCGTATGACCAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCAtct                                                                                                                <  5:269542/149‑1 (MQ=255)
                                      cGTGTTCGCGTATGACCAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAggg                                                                                                                                        <  5:342880/123‑1 (MQ=255)
                                      cGTGTTCGCGTATGACCAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAggg                                                                                                                                        >  6:342880/1‑123 (MQ=255)
                                              cgTATGACCAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGgt                                                                                                      <  5:233854/149‑1 (MQ=255)
                                                   gACCAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTAtt                                                                                                 >  3:235439/1‑149 (MQ=255)
                                                   gACCAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTAtt                                                                                                 >  1:42611/1‑149 (MQ=255)
                                                     ccAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCa                                                                                               <  8:194278/149‑1 (MQ=255)
                                                     ccAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCa                                                                                               >  8:142592/1‑149 (MQ=255)
                                                      cAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAg                                                                                              >  3:47614/1‑149 (MQ=255)
                                                      cAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAg                                                                                              >  2:199174/1‑149 (MQ=255)
                                                        aTGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAgtg                                                                                            <  7:142592/149‑1 (MQ=255)
                                                              tATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAgt                                                                                             <  7:151333/142‑1 (MQ=255)
                                                              tATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAgt                                                                                             >  8:151333/1‑142 (MQ=255)
                                                                              cgcTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGCCCg                                                                      >  5:208385/1‑149 (MQ=255)
                                                                               gcTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGCCCGc                                                                     >  2:22292/1‑149 (MQ=255)
                                                                               gcTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGCCCGc                                                                     <  4:235439/149‑1 (MQ=255)
                                                                               gcTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGCCCGc                                                                     <  2:42611/149‑1 (MQ=255)
                                                                               gcTCCTTGCAGTCTGTCCTGGCTGCCATCAAAACATGCCTCCACTTCGCCCGCGCTCGGCGCGGCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGCCCGc                                                                     <  4:281502/149‑1 (MQ=255)
                                                                                   cTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCt                                                                                                                            >  6:211324/1‑90 (MQ=255)
                                                                                   cTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCt                                                                                                                            <  5:211324/90‑1 (MQ=255)
                                                                                    ttGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGgcc                                                                                                                       <  6:347814/94‑1 (MQ=255)
                                                                                    ttGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGgcc                                                                                                                       >  5:347814/1‑94 (MQ=255)
                                                                                    ttGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGccc                                                                       <  6:199281/142‑1 (MQ=255)
                                                                                    ttGAAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGccc                                                                       >  5:199281/1‑142 (MQ=255)
                                                                                         gTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGGCGTCGACTGCGCTGAGCAGGGCGAACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCATGTCGAAGCCCGCCACTGCCAg                                                            >  1:261550/1‑149 (MQ=255)
                                                                                               ccTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGCCCGCCTCTGCCAGTCGCCtt                                                     >  8:43636/1‑149 (MQ=255)
                                                                                                   gTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCTACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGCCCGCCTCTGCCAGTCGCCTTTCGa                                                 <  7:316795/149‑1 (MQ=255)
                                                                                                   gTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGCCCGCCTCTGCCAGTCGCCTTTCg                                                  >  8:316795/1‑148 (MQ=255)
                                                                                                      ggCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGCCCGCCTCTGCCAGTCGCCTTTCGAAt                                               <  6:208385/148‑1 (MQ=255)
                                                                                                       gCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGCCCGCCTCTGCCAGTCGCCTTTCGAATaa                                             >  6:331175/1‑149 (MQ=255)
                                                                                                       gCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGCCCGCCTCTGCCAGTCGCCTTTCGAATaa                                             >  8:328652/1‑149 (MQ=255)
                                                                                                        cATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGTGTGTATTCAGTGTACTGCGCCCTGTCGAAGCCCGCCTCTGCCAGTCGCCTTTCGAATAAc                                            <  5:331175/149‑1 (MQ=255)
                                                                                                            aaaaaaTGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGCCCGCCTCTGCCAGTCGCCTTTCGAATAACGCCg                                        >  2:108590/1‑149 (MQ=255)
                                                                                                              aaaaTGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTg                                                                                                                           <  6:42251/64‑1 (MQ=255)
                                                                                                              aaaaTGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTg                                                                                                                           >  5:42251/1‑64 (MQ=255)
                                                                                                                     cTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGCCCGCCTCTGc                                                               <  4:52243/117‑1 (MQ=255)
                                                                                                                      tCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGCCCGCCTCTGc                                                               >  8:34842/1‑116 (MQ=255)
                                                                                                                       ccACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCTGGTGTATTCAg                                                                                              <  5:252250/84‑1 (MQ=255)
                                                                                                                       ccACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAg                                                                                              >  6:252250/1‑84 (MQ=255)
                                                                                                                        cACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGCCCGCCTCTGCCAGTCGCCTTTCGAATAACGCCGGGCTGCCAAATg                            >  3:21597/1‑149 (MQ=255)
                                                                                                                               cccTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGCCCGCCTCTGCCAGTCGCCTTTCGAATAACGCCGGGCTGCCAAATGCCGCTTc                     <  2:261550/149‑1 (MQ=255)
                                                                                                                                  tcgctcgGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGCCCGCCTCTGCCAGTCGCCTTTCGAATAACGCCGGGCTGCCAAAt                             <  7:133164/138‑1 (MQ=255)
                                                                                                                                  tcgctcgGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGCCCGCCTCTGCCAGTCGCCTTTCGAATAACGCCGGGCTGCCAAAt                             >  8:133164/1‑138 (MQ=255)
                                                                                                                                         gcgcGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGCCCGCCTCTGCCAGTCGCCTTTCGAATAACGCCGGGCTGCCAAATGCCGCTTCGATCTCGcc            >  5:172842/1‑148 (MQ=255)
                                                                                                                                                  gACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGCCCGCCTCTGCCAGTCGCCTTTCGAATAACGCCGGGCTGCCAAATGCCGCTTCGATCTCGcc            >  2:301858/1‑141 (MQ=255)
                                                                                                                                                  gACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGCCCGCCTCTGCCAGTCGCCTTTCGAATAACGCCGGGCTGCCAAATGCCGCTTCGATCTCGcc            <  1:301858/141‑1 (MQ=255)
                                                                                                                                                  gACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGCCCGCCTCTGCCAGTCGCCTTTCGAATAACGCCGGGCTGCCAAATGCCGCTTCGATCTCGCCAACCTgc     <  1:22292/148‑1 (MQ=255)
                                                                                                                                                    cTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGCCCGCCTCTGCCAGTCGCCTTTCGAATAACGCCGGGCTGCCAAATGCCGCTTCGATCTCGCCAACCTGCGcc  <  7:43636/149‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
CCGCTGCCCGATGAGCGTTGCCCGAGCCAAGGCCAGGCCGTGTTCGCGTATGACCAATGGATTATCACTTTGGTTCTGCGCTCCTTGCAGTCTGTCCTGGTTGGCATCAAAAAATGCCTCCACTTCGCCCTCGCTCGGCGCGTCGACTGCGCTGAGCAGGGCGTACACTTGCTGGGCCGCCATCTCATGCCGGGTGTATTCAGTGTACTGCGCCCTGTCGAAGCCCGCCTCTGCCAGTCGCCTTTCGAATAACGCCGGGCTGCCAAATGCCGCTTCGATCTCGCCAACCTGCGCC  >  NC_002947/3948961‑3949255

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: