Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 4,970,878 Δ1 bp 7.0% coding (688/930 nt) PP_4379 ← 3‑oxoacyl‑ACP synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029474,970,8780C. 7.0% 181.9 / 7.3 57coding (688/930 nt)PP_43793‑oxoacyl‑ACP synthase
Reads supporting (aligned to +/- strand):  ref base C (24/29);  new base . (2/2);  total (26/31)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01

CAGCAGCAGCGGAACACTGGAGGACACCGTATTGCCGGTTTCCAGCATGTCCTTGACGAACTTCTCCGGGTGTTGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTGGCGGCCGTTCATGAAGAACTTGCCGTCACTGACTTTCAGGTGCTCGGCACCG  >  NC_002947/4970732‑4971008
                                                                                                                                                   |                                                                                                                                  
cagcagcagCGGAACACTGGAGGACACCGTATTGCCGGTTTCCAGCATGTCCTTGACGAACTTCTCCGGGTGTTGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATcc                                                                                                                                   >  4:318241/1‑148 (MQ=255)
  gcagcagcGGAACACTGGAGGACACCGTATTGCCGGTTTCCAGCATGTCCTTGACGAACTTCTCCGGGTGTTGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCcgac                                                                                                                                <  4:212900/149‑1 (MQ=255)
         cGGAACACTGGAGGACACCGTATTGCCGGTTTCCAGCATGTCCTTGACGAACTTCTCCGGGTGTTGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCa                                                                                                                         <  1:160144/149‑1 (MQ=255)
                 tGGAGGACACCGTATTGCCGGTTTCCAGCATGTCCTTGACGAACTTCTCCGGGTGTTGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCTGAAGTCGTCGGATATCGACGCCTTctgc                                                                                                                       <  6:235986/143‑4 (MQ=255)
                 tGGAGGACACCGTATTGCCGGTTTCCAGCATGTCCTTGACGAACTTCTCCGGGTGTTGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCTGAAGTCGTCGGATATCGACGCCTTctgc                                                                                                                       >  5:235986/1‑140 (MQ=255)
                 tGGAGGACACCGTATTGCCGGTTTCCAGCATGTCCTTGACGAACTTCTCCGGGTGTTGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTc                                                                                                                          >  3:93010/1‑140 (MQ=255)
                 tGGAGGACACCGTATTGCCGGTTTCCAGCATGTCCTTGACGAACTTCTCCGGGTGTTGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTc                                                                                                                          <  4:93010/140‑1 (MQ=255)
                   gcggaCTCCGTATTGCCGGTTTCCAGCATGTCCTTGACGAACTTCTCCGGGTGTTGCTCGTCAAAGCGTCGCGCCATGGCGTCGACAATCGCCGCACTGCCCTGGCGGATGCAGCAGGCGTCGATATCAGACGCCTTCAGGCCCGTGGc                                                                                                               >  7:34645/3‑149 (MQ=255)
                   gaggaCACCGTATTGCCGGTTTCCAGCATGTCCTTGACGAACTTCTCCGGGTGTTGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGc                                                                                                               <  6:356964/149‑1 (MQ=255)
                      tacacCGTATTGCCGGTTTCCAGCATGTCCTTGACGAACTTCTCCGGGTGTTGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATc                                                                                                            <  3:208652/148‑1 (MQ=255)
                      gaCACCGTATTGCCGGTTTCCAGCATGTCCTTGACGAACTTCTCCGGGTGTTGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATc                                                                                                            <  3:243976/149‑1 (MQ=255)
                        cacCGTATTGCCGGTTTCCAGCATGTCCTTGACGAACTTCTCCGGGTGTTGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATc                                                                                                            >  4:208652/1‑147 (MQ=255)
                        cacCGTATTGCCGGTTTCCAGCATGTCCTTGACGAACTTCTCCGGGTGTTGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATc                                                                                                            >  3:9873/1‑147 (MQ=255)
                           cGTATTGCCGGTTTCCAGCATGTCCTTGACGAACTTCTCCGGGTGTTGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCcag                                                                                                         >  5:264973/1‑147 (MQ=255)
                               ttGCCGGTTTCCAGCATGTCCTTGACGAACTTCTCCGGGTGTTGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTc                                                                                                   <  2:349421/149‑1 (MQ=255)
                                    ggTTTCCAGCATGTCCTTGACGAACTTCTCCGGGTGTTGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCa                                                                                                                         <  5:142085/122‑1 (MQ=255)
                                    ggTTTCCAGCATGTCCTTGACGAACTTCTCCGGGTGTTGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCa                                                                                                                         >  6:142085/1‑122 (MQ=255)
                                                 tCCTTGACGAACTTCTCCGGGTGTTGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCAc                                                                                 <  3:318241/149‑1 (MQ=255)
                                                    ttGACGAACTTCTCCGGGTGTTGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCtt                                                                              >  1:2583/1‑149 (MQ=255)
                                                       aCGAACTTCTCCGGGTGTTGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGAt                                                                           >  3:5496/1‑149 (MQ=255)
                                                       aCGAACTTCTCCGGGTGTTGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGAt                                                                           >  3:45189/1‑149 (MQ=255)
                                                         gAACTTCTCCGGGTGTTGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGt                                                                                           <  4:220200/131‑1 (MQ=255)
                                                           aCTTCTCCGGGTGTTGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAgg                                                                       <  2:2583/149‑1 (MQ=255)
                                                                tcCGGGTGTTGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGaa                                                                  <  4:9873/149‑1 (MQ=255)
                                                                  cGGGTGTTGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGt                                                                <  6:264973/149‑1 (MQ=255)
                                                                        ttGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATa                                                          <  7:67923/149‑1 (MQ=255)
                                                                           ctctTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTNCGCt                                                                                      <  5:154359/118‑1 (MQ=255)
                                                                           ctctTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCt                                                                                      >  6:154359/1‑118 (MQ=255)
                                                                            tctTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTg                                                      >  6:23672/1‑149 (MQ=255)
                                                                              ttCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGaa                                                            <  1:311840/141‑1 (MQ=255)
                                                                              ttCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGaa                                                            >  2:311840/1‑141 (MQ=255)
                                                                               tCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAAt                                                           <  4:86783/141‑1 (MQ=255)
                                                                               tCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAAt                                                           >  3:86783/1‑141 (MQ=255)
                                                                                 aaaGCGTCGCGCCACGGCGTCGACAAACGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTggcggc                                                 >  2:205625/1‑149 (MQ=255)
                                                                                    gCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGTGAAGTTGAATACCTGGCGGCCGt                                              <  4:45189/149‑1 (MQ=255)
                                                                                           gcCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGGTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTGGCGGCCGTTCa                                           >  7:185202/1‑145 (MQ=255)
                                                                                           gcCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTGGCGGCCGTTCa                                           <  8:185202/145‑1 (MQ=255)
                                                                                           gcCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTGGCGGCCGTTCATgaa                                       <  2:277593/149‑1 (MQ=255)
                                                                                           gcCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTGGCGGCCGTTCATg                                         >  1:277593/1‑147 (MQ=255)
                                                                                                  gcgcGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTGGCGGCCGTTCATGAAGAACTTg                                <  3:159960/146‑1 (MQ=255)
                                                                                                    tCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTGGCGGCCGTTCATGAAGAACTTGcc                              <  4:5496/149‑1 (MQ=255)
                                                                                                      gACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTGGCGGCCGTTCATGAAGAACTTGCCGt                            >  2:283425/1‑149 (MQ=255)
                                                                                                      gACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTGGCGGCCGTTCATGAAGAACTTGCCGt                            >  6:202041/1‑149 (MQ=255)
                                                                                                             gccgcACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTGGCGGCCGTTCATGAAGAACTTGCCGTCACTGa                      <  3:157419/148‑1 (MQ=255)
                                                                                                               cgcACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTGGCGGCCGTTCATGAAGAACTTGCCGTCACTGACtt                   >  4:333346/1‑149 (MQ=255)
                                                                                                                 cACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTGGCGGCCGTTCATgaagaa                                    <  7:324223/130‑1 (MQ=255)
                                                                                                                 cACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTGGCGGCCGTTCATgaagaa                                    >  8:324223/1‑130 (MQ=255)
                                                                                                                 cACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTGGCGGCCGTTCATGAAGAACTTGCCGTCACTGACttt                  >  8:277057/1‑148 (MQ=255)
                                                                                                                   cTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTGGCGGCCGTTCATGAAGAACTTGCCGTCACAGACTTTCAg               <  5:23672/149‑1 (MQ=255)
                                                                                                                      cccTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTGGCGGCCGTTCATGAAGAACTTGCCGTCACTGACTTTCAg               >  5:45427/1‑146 (MQ=255)
                                                                                                                      cccTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTGGCGGCCGTTCATGAAGAACTTGCCGTCACTGACTTTCAg               <  6:45427/146‑1 (MQ=255)
                                                                                                                           gtggATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTGGCGGCCGTTCATGAAGAACTTGCCGTCACTGACTTTCAGGTGCTc         <  3:3463/147‑1 (MQ=255)
                                                                                                                           gtggATGCAGAAGGCATCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTGGCGGCCGTTCATGAAGAACTTGCCGTCACTGACTTTCAGGTGCTCgg       >  2:144249/1‑149 (MQ=255)
                                                                                                                                tGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTGGCGGCCGTTCATGAAGAACTTGCCGTCACTGACTTTCAGGTGCTCGGCACCg  <  3:333346/149‑1 (MQ=255)
                                                                                                                                   tgAAGTCGTCGGATATCGACGCCTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTGGCGGCCGTTCATGAAGAACTTGCCg                             <  5:260599/118‑1 (MQ=255)
                                                                                                                                   tgAAGTCGTCGGATATCGACGCCTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTGGCGGCCGTTCATGAAGAACTTGCCg                             >  6:260599/2‑119 (MQ=255)
                                                                                                                                          gTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTGGCGGCCGTTCATGAAGAACTTGCCg                             <  4:174716/112‑1 (MQ=255)
                                                                                                                                          gTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTGGCGGCCGTTCATGAAGAACTTGCCg                             >  3:174716/1‑112 (MQ=255)
                                                                                                                                                   |                                                                                                                                  
CAGCAGCAGCGGAACACTGGAGGACACCGTATTGCCGGTTTCCAGCATGTCCTTGACGAACTTCTCCGGGTGTTGCTCTTCAAAGCGTCGCGCCACGGCGTCGACAATCGCCGCACTGCCCTGGTGGATGCAGAAGGCGTCGATATCCGACGACTTCAGGCCGCTGGCATCCAGCAGCTCGTGCAGGTGCGCTGGCACCTTGATCAGGGCGAAGTTGAATACCTGGCGGCCGTTCATGAAGAACTTGCCGTCACTGACTTTCAGGTGCTCGGCACCG  >  NC_002947/4970732‑4971008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: