| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 904,941:1 | +G | 6.9% | coding (1200/2160 nt) | PP_0788 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 904,941 | 1 | . | G | 6.9% | 228.0 / 8.9 | 58 | coding (1200/2160 nt) | PP_0788 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (25/29); new base G (2/2); total (27/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.55e-01 | |||||||||||
ACAACGACGACAACCTGCCGGCCAGCCTGCGGGCGCTGATTACGCGCCTTCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCGTATCGTCCAGCGCTTGCTCAATGATTTTGCCGACGATGCCAGCCTGTTCGCCGAGCTGCTCGACGACTTCCTGGCATTCAATCA > NC_002947/904796‑905087 | acaACGACGACAACCTGCCGGCCAGCCTGCGGGCGCTGATTACGCGCCTTCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCc‑gcg > 2:25043/1‑149 (MQ=255) gacgacAACCTGCCGGCCAGCCTGCGGGCGCTGATTACGCGCCTTCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTgg < 1:209408/149‑1 (MQ=255) gacgacAACCTGCCGGCCAGCCTGCGGGCGCTGATTACGCGCCTTCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTgg > 2:209408/1‑149 (MQ=255) cgacAACCTGCCGGCCAGCCTGCGGGCGCTGATTACGCGCCTTCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCG‑CGGCGCCGGCGAtttcgt < 2:56548/149‑5 (MQ=255) gacAACCTGCCGGCCAGCCTGCGGGCGCTGATTACGCGCCTTCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTg < 5:296700/149‑1 (MQ=255) acAACCTGCCGGCCAGCCTGCGGGCGCTGATTACGCGCCTTCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTgg < 5:111406/149‑1 (MQ=255) aaCCTGCCGGCCAGCCTGCGGGCGCTGATTACGCGCCTTCATATTCCCCTGCTCAAGGTGGCATTACTGTACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGGTCAACGAACTCTCCGGCGCC‑GCGATTGGCTGGGa > 8:245189/1‑149 (MQ=255) aaCCTGCCGGCCAGCCTGCGGGCGCTGATTACGCGCCTTCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTgg > 5:23735/1‑147 (MQ=255) aaCCTGCCGGCCAGCCTGCGGGCGCTGATTACGCGCCTTCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGa < 2:259152/149‑1 (MQ=255) ccTGCCGGCCAGCCTGCGGGCGCTGATTACGCGCCTTCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTgg > 6:56362/1‑141 (MQ=255) ccTGCCGGCCAGCCTGCGGGCGCTGATTACGCGCCTTCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTgg < 5:56362/141‑1 (MQ=255) ccGGCCAGCCTGCGGGCGCTGATTACGCGCCTTCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGc < 3:150178/147‑1 (MQ=255) gCCAGCCTGCGGGCGCTGATTACGCGCCTTCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAg > 8:48379/1‑149 (MQ=255) gCCAGCCTGCGGGCGCTGATTACGCGCCTTCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAg < 7:48379/149‑1 (MQ=255) ggCGCTGTTTACGCGCCTTCTTATTCCCCTGCTCAATGTGGCATTTCTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGGGCGCCGTTTGCTCAACGAAATCGCCGTCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGGCAGc < 8:320190/149‑1 (MQ=255) gcgcTGATTACGCGCCTTCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCg > 2:306465/1‑149 (MQ=255) cgcTGATTACTCGCCTTCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGTCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGt < 6:102484/149‑1 (MQ=255) cgcTGATTACGCGCCTTCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGt < 6:342969/149‑1 (MQ=255) gATTACGCGCCTTCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTAAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACa > 4:215605/1‑149 (MQ=255) aTTACGCGCCTTCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTgg < 3:219134/120‑1 (MQ=255) aTTACGCGCCTTCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTAAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTgg > 4:219134/1‑120 (MQ=255) ttACGCGCCTTCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGc > 1:251703/1‑149 (MQ=255) gcgcCTTCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGc < 2:251703/149‑1 (MQ=255) gcgcCTTCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGc < 6:23735/149‑1 (MQ=255) cTTCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGa < 3:104524/137‑1 (MQ=255) cTTCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGa > 4:104524/1‑137 (MQ=255) tCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGc > 2:338791/1‑149 (MQ=255) tCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGc > 5:359072/1‑149 (MQ=255) ccTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGc < 6:359072/149‑1 (MQ=255) cTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCg > 6:193624/1‑149 (MQ=255) cTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCg > 3:35572/1‑149 (MQ=255) tCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCGTATc > 3:67049/1‑149 (MQ=255) aaGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCGTATc < 5:193624/147‑1 (MQ=255) ggTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGc > 6:18552/1‑121 (MQ=255) ggTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGc < 5:18552/121‑1 (MQ=255) gTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCGTATCGTCCa < 4:35572/149‑1 (MQ=255) ttACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCGTATCGTCCAGCGCtt < 1:338791/149‑1 (MQ=255) tGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCGTATCGTCCAGCGCTTGcg > 1:235237/1‑147 (MQ=255) aCAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCGTTTCGTCCAGCGCTTGCTCAAt < 3:215605/149‑1 (MQ=255) aaGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCGTATCGTCCAGCGCTTGCTCAATGa > 7:196483/1‑149 (MQ=255) gCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCGTATCGTCCAGCGCTTGCTCAATGATTTTGCCGACGAt > 5:142248/1‑149 (MQ=255) gCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCGTATCGTCCAGCGCTTGCTCAATGATTTTGCCGACGAt < 8:196483/149‑1 (MQ=255) gCCACCCGGCGCGGCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCgg < 2:156737/95‑1 (MQ=255) gCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCgg > 1:156737/1‑95 (MQ=255) aCCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCGTATCGTCCAGCGCTTGCTCAATGATTTTGCcga < 5:321974/133‑1 (MQ=255) aCCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCGTATCGTCCAGCGCTTGCTCAATGATTTTGCcga > 6:321974/1‑133 (MQ=255) ccGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCGTATCGTCCAGCGCTTGCTCAATGATTTTGCCGACGATGCCAGCCTGTTCGc > 1:240299/1‑149 (MQ=255) cGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCGTATCGTCCAGCGCTTGCTCAATGATTTTGCCGACGATGCCAGCCTGTTCGcc < 7:245189/149‑1 (MQ=255) tgTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCGGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCGTATCGTCCAGCGCTTGCTCAATGAtttt < 4:184939/116‑1 (MQ=255) gCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCGTATCGTCCAGCGCTTGCTCAATGATTTTGCCGACGATGCCAGCCTGTTCGCCGAGCTGCTcgac < 1:306465/148‑1 (MQ=255) tCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCGTATCGTCCAGCGCTTGCTCAATGAGTTTGCCGACGATGCCAGCCTGTTCGCCGAGCTGCTcgacgcc > 7:264275/1‑147 (MQ=255) cagccaaTCG‑CGGCGCCGGCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCGTATCGTCCAGCGCTTGCTCAATGATTTTGCCGACGATGCCAGCCTGTTCGCCGa < 2:149653/129‑1 (MQ=255) cagccaaTCG‑CGGCGCCGGCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCGTATCGTCCAGCGCTTGCTCAATGATTTTGCCGACGATGCCAGCCTGTTCGCCGa > 1:149653/6‑134 (MQ=255) aaCGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGc > 1:45858/1‑79 (MQ=255) aaCGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGc < 2:45858/79‑1 (MQ=255) aaCGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCGTATCGTCCAGCGCTTGCTCAATGATTTTGCCGACGAt > 2:173348/1‑117 (MQ=255) ccaaTCG‑CGGCGCCGGCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCGTATCGTCCAGCGCTTGCTCAATGATTTTGCCGACGATGCCAGCCTGTTCGCCGAGCTGCTCGACGACTTCCt > 7:262607/3‑149 (MQ=255) aaaTCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCGTATCGTCCAGCGCTTGCTCAATGATTTTGCCGACGATGCCAGCCTGTTCGCCGAGCTGCTCGACGACTTCCTg < 6:142248/149‑1 (MQ=255) gcgcC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCGTATCGTCCAGCGCTTGCTCAATGATTTTGCCGACGATGCCAGCCTGTTCGCCGAGCTGCTCGACGACTTCCTGGCATTCAAt < 2:235237/149‑1 (MQ=255) gcc‑gcGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCGTATCGTCCAGCGCTTGCTCAATGATTTTGCCGACGATGCCAGCCTGTTCGCCGAGCTGCTCGACGACTTCCTGGCATTCAATCa < 2:240299/149‑1 (MQ=255) | ACAACGACGACAACCTGCCGGCCAGCCTGCGGGCGCTGATTACGCGCCTTCATATTCCCCTGCTCAAGGTGGCATTACTGGACAAGGGGCTGTTCAGCCGGAGTAGCCACCCGGCGCGCCGTTTGCTCAACGAAATCGCCGGCGCC‑GCGATTGGCTGGGAGTGCGGCAGCGAGTGCCAGCGTGACAGCTTGCACATGCGGGTAGAGCGTATCGTCCAGCGCTTGCTCAATGATTTTGCCGACGATGCCAGCCTGTTCGCCGAGCTGCTCGACGACTTCCTGGCATTCAATCA > NC_002947/904796‑905087 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |