| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 955,082:1 | +G | 9.5% | intergenic (+36/‑277) | cyoE → / → alaC | protoheme IX farnesyltransferase/aminotransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 955,082 | 1 | . | G | 9.5% | 224.9 / 20.5 | 63 | intergenic (+36/‑277) | cyoE/alaC | protoheme IX farnesyltransferase/aminotransferase |
| Reads supporting (aligned to +/- strand): ref base . (26/31); new base G (3/3); total (29/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.19e-01 | |||||||||||
GGGCCCGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAGCGGGTTTACCCGCG > NC_002947/954937‑955177 | gggCCCGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑Gcc > 7:60934/1‑149 (MQ=255) tttggCTTCTCCATCCTCACCGTCACTGCCGTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGttttttttt < 6:201801/145‑1 (MQ=255) ttCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGttttttttg < 2:246275/148‑2 (MQ=255) tCGGCCTCTCCATCCTCCCCGGCACTGCCCTGAGCGTCATGATGGGTGCGGACAGCCAGACCGCTCCGGATGCCCTGATGACCTCCGC‑‑A‑CGCTGAAACTGCTGCCTGCTTCACGAAAACCCCCGCCACTGT‑GCCGGGGTTTTTTTTTgg < 6:60761/149‑1 (MQ=255) ggCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTgggg < 7:169900/149‑1 (MQ=255) ggCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTggg < 5:35331/148‑1 (MQ=255) ttCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTa > 7:252514/1‑149 (MQ=255) cATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGttttc > 5:187486/1‑132 (MQ=255) cATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGttttc < 6:187486/133‑2 (MQ=255) cATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTAttttt > 5:51769/1‑149 (MQ=255) tCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTcc < 6:51769/149‑1 (MQ=255) atCACCTTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCt < 4:266312/147‑1 (MQ=255) tCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGG‑CACAGTGGCCGGGGttttcgt > 5:340828/1‑127 (MQ=255) tCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGG‑CACAGTGGCCGGGGttttcgt < 6:340828/130‑4 (MQ=255) cACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTgg > 3:137344/1‑133 (MQ=255) cACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTgg < 4:137344/133‑1 (MQ=255) cGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCTGAGCGCTGAAACTGGTGCCTGTTTCACAAAAACCCCGGCCAATGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCtttg > 1:108804/1‑149 (MQ=255) cGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCg > 2:134356/1‑149 (MQ=255) cccTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTc > 8:306888/1‑149 (MQ=255) cTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTggg > 3:198054/1‑121 (MQ=255) cTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTggg < 4:198054/121‑1 (MQ=255) gCGTGAGGACGGGTGTGGACAGCCAGTCCGCGGCGGAGGTGCGGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGt < 8:141852/149‑1 (MQ=255) atgatgGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTcgc > 4:241500/1‑140 (MQ=255) atgatgGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTcgc < 3:241500/140‑1 (MQ=255) tgGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGc > 2:329364/1‑124 (MQ=255) tgGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGc < 1:329364/124‑1 (MQ=255) tgGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCt > 7:42101/1‑149 (MQ=255) tgtgGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTa < 7:306888/149‑1 (MQ=255) ggACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTAtttt < 6:312630/109‑1 (MQ=255) ggACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTAtttt > 5:312630/1‑109 (MQ=255) gACAGCCAGACCGCTGCGGATGTGCTTATGACCTACGC‑‑A‑CGCTGAAACTTCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAg < 7:193720/149‑1 (MQ=255) gACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACaa < 8:42101/148‑1 (MQ=255) aCAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACagg > 5:279411/1‑146 (MQ=255) aGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTgg > 6:353538/1‑96 (MQ=255) gCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACaggaacc < 3:270581/149‑7 (MQ=255) ccAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTATTAGCGGGTAAAACCCCTCCTACAATGttac > 3:103900/1‑147 (MQ=255) aGACCGCTGCGGATGTGCTGTTGACCTACGC‑‑C‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCGCGGCCACTGT‑GCCGGGGTTTTTTTTTtgggg < 6:16025/95‑1 (MQ=255) aGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTg < 2:108804/149‑1 (MQ=255) aCCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGG‑CACAGTGGCCGGGGt < 5:209257/80‑1 (MQ=38) aCCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGG‑CACAGTGGCCGGGGt < 5:204272/80‑1 (MQ=38) aCCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGG‑CACAGTGGCCGGGGt > 6:204272/1‑80 (MQ=38) aCCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGG‑CACAGTGGCCGGGGt > 6:209257/1‑80 (MQ=38) ccGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAg < 1:134356/149‑1 (MQ=255) gCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGa < 8:252514/149‑1 (MQ=255) ggATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAAGGTTCCTGTAGGAGCggg > 1:235775/1‑149 (MQ=255) gcctgtgCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTATCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAGCggg < 8:60934/146‑1 (MQ=255) tgatgaCCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCGGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGtt > 4:44676/1‑107 (MQ=255) tgatgaCCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACa < 6:251088/122‑1 (MQ=255) tgatgaCCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGt > 7:167882/1‑126 (MQ=255) tgatgaCCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGt < 8:167882/126‑1 (MQ=255) aCCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAGCggg < 2:45276/136‑1 (MQ=37) aCCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAGCggg > 1:45276/1‑136 (MQ=37) cTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAGCggg < 7:335394/134‑1 (MQ=37) cTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAGCggg > 8:335394/1‑134 (MQ=37) cTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAGCgg < 4:127436/133‑1 (MQ=37) cTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAGCgg > 3:127436/1‑133 (MQ=37) ccTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTaaa > 6:265304/1‑82 (MQ=255) aCGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAGCggg > 3:195223/1‑105 (MQ=21) aCGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAGCggg < 4:195223/105‑1 (MQ=21) ccGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAGCGGGt < 4:127123/97‑1 (MQ=255) ccGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAGCGGGt > 3:127123/1‑97 (MQ=255) ccGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAGCGGGTTTACCcgcg < 3:237901/106‑1 (MQ=255) ccGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAGCGGGTTTACCcgcg > 4:237901/1‑106 (MQ=255) | GGGCCCGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGC‑‑A‑CGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAGCGGGTTTACCCGCG > NC_002947/954937‑955177 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |