Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,941,556:1 | +G | 6.9% | coding (788/912 nt) | PP_2574 → | LysR family transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,941,556 | 1 | . | G | 6.9% | 224.3 / 9.1 | 58 | coding (788/912 nt) | PP_2574 | LysR family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base . (31/23); new base G (2/2); total (33/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GAGATGGGCCTGGCACCGAACATCGTCTTCAGTTCACCGTCGATCGAGATGGTGCGCGGCATGGTCGGTCAGGGTTTCGGTTTTTCGTTGCTGGTAACCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGA > NC_002947/2941408‑2941704 | gagaTGGGCCTGGCACCGAACATCGTCTTCAGTTCACCGTCGATCGAGATGGTGCGCGGCATGGTCGGTCAGGGTTTCGGTTTTTCGTTGCTGGTAACCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGa > 4:152933/1‑149 (MQ=255) aTGGGCCTGGCACCGAACATCGTCTTCAGTTCACCGTCGATCGAGATGGTGCGCGGCATGGTCGGTCAGGGTTTCGGTTTTTCGTTGCTGGTAACCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CAt > 8:144102/1‑149 (MQ=255) ggCCTGGCACCGAACATCGTCTTCAGTTCACCGTCGATCGAGATGGTGCGCGGCATGGTCGGTCAGGGTTTCGGTTTTTCGTTGCTGGTAACCCGTCCGCACTCGGAATACACCTATGACGGCCACCGCCTGGCAATGCTCGA‑ACTTGc > 8:215008/1‑149 (MQ=255) gCACCGAACATCGTCTTCAGTTCACCGTCGATCGAGATGGTGCGCGGCATGGTCGGTCAGGGTTTCGGTTTTTCGTTGCTGGTAACCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGcc < 6:126770/149‑1 (MQ=255) aCCGAACATCGTCTTCAGTTCACCGTCGATCGAGATGGTGCGCGGCATGGTCGGTCAGGGTTTCGGTTTTTCGTTGCTGGTAACCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATG‑TCGAGCATTGccag > 6:136634/1‑142 (MQ=255) aCCGAACATCGTCTTCAGTTCACCGTCGATCGAGATGGTGCGCGGCATGGTCGGTCAGGGTTTCGGTTTTTCGTTGCTGGTAACCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATG‑TCGAGCATTGccag < 5:136634/144‑3 (MQ=255) cAGTTCACCGTCGATCGAGATGGGGCGCGGCATGGTCGGTCAGGGTTTCGGTTTTTCGTTGCTGGTAACCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCggg < 7:215008/147‑1 (MQ=255) aGTTCACCGTCGATCGAGATGGTGCGCGGCATGGTCGGTCAGTGTTTCGGTTTTTCGTTGCTGGTAACCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGggc < 7:144102/148‑1 (MQ=255) ccGTCGATCGAGATGGTGCGCGGCATGGTCGGTCAGGGTTTCGGTTTTTCGTTGCTGGTAACCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTgc < 7:307014/149‑1 (MQ=255) tcgaGATGGTGCGCGGCATGGTCGGTCAGGGTTTCGGTTTTTCGTTGCTGGTAACCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATG‑TCGAGCATTGccaggc < 1:296225/117‑5 (MQ=255) tcgaGATGGTGCGCGGCATGGTCGGTCAGGGTTTCGGTTTTTCGTTGCTGGTAACCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATG‑TCGAGCATTGccaggc > 2:296225/1‑113 (MQ=255) gagaTGGTGCGCGGCATGGTCGGTCAGGGTTTCGGTTTTTCGTTGCTGGTAACCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGtt < 3:152933/149‑1 (MQ=255) ggtcggtcAGGGTTTCGGTTTTTCGTTGCTGGTAACCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGa > 2:279841/1‑149 (MQ=255) gtcggtcAGGGTTTCGGTTTTTCGTTGCTGGTAACCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGAc < 1:279841/149‑1 (MQ=255) gtcggtcAGGGTTTCGGTTTTTCGTTGCTGGTAACCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGATGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGAc > 1:143356/1‑149 (MQ=255) aGGGTTTCGGTTTTTCGTTGCTGGTAACCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCg > 6:95918/1‑149 (MQ=255) tttCGGTTTTTCGTTGCTGGTAACCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGgcg > 5:235404/1‑148 (MQ=255) gTTTTTCGTTGCTGGTAACCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGa > 4:52293/1‑122 (MQ=255) gTTTTTCGTTGCTGGTAACCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGa < 3:52293/122‑1 (MQ=255) ttGCTGGTAACCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTg > 1:319623/1‑147 (MQ=255) ttGCTGGTAACCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGa < 7:98816/149‑1 (MQ=255) tGGTAACCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGttt > 1:37645/1‑149 (MQ=255) gTAACCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAgtt > 4:41801/1‑134 (MQ=255) gTAACCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAgtt < 3:41801/134‑1 (MQ=255) gTAACCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTg > 1:295130/1‑149 (MQ=255) aCCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGTCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTc < 5:95918/148‑1 (MQ=255) ccGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCgg > 7:284765/1‑148 (MQ=255) aCTCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTg > 3:201090/1‑149 (MQ=255) cTCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTTTCGGGAAGAGCTgg < 2:143356/149‑1 (MQ=255) tCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCaaa > 2:346574/1‑108 (MQ=255) tCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCaaa < 1:346574/108‑1 (MQ=255) tCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGc > 6:259538/1‑149 (MQ=255) tCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGc > 8:193361/1‑149 (MQ=255) ggAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCg > 1:251651/1‑148 (MQ=255) gAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGaa < 2:251651/149‑1 (MQ=255) cacCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGATGGCTGCGGAGTGGTTGAAGCGAGTCCAGCTCACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAATAGCTGGCGAAGTTcc > 6:210369/1‑149 (MQ=255) cgaTGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGGCGGGGCTGGGTGGGGCGGGGGTGCAGCGAGTGCAGCGGGCCAAACCGGGGCAGGTGTTGGTGGGGTTTTGTGGGGTAGGGCGGGCGGAGTTACTg > 6:168171/3‑148 (MQ=255) tGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGt < 7:193361/149‑1 (MQ=255) aCGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGAc < 1:290246/88‑1 (MQ=255) aCGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGAc > 2:290246/1‑88 (MQ=255) aCGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTgg > 2:284505/1‑132 (MQ=255) aCGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTgg < 1:284505/132‑1 (MQ=255) gCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTgg > 6:21609/1‑129 (MQ=255) gCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTgg < 5:21609/129‑1 (MQ=255) ccAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCAc > 6:133861/1‑149 (MQ=255) aCGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGcc < 7:48463/149‑1 (MQ=255) cGCCTGGCAATGTTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCa > 4:107536/1‑149 (MQ=255) ccTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATg < 2:37645/149‑1 (MQ=255) gtGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCTCTGTGGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGa < 8:250140/100‑1 (MQ=255) tGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCAt < 3:317222/146‑1 (MQ=255) tGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCAt > 4:317222/1‑146 (MQ=255) gCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTcc < 5:354492/127‑1 (MQ=255) gCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTcc > 6:354492/1‑127 (MQ=255) aaTGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCAccc > 8:40828/1‑149 (MQ=255) aaTGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCAccc > 8:46112/1‑149 (MQ=255) cTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACTCCATGCCAcccctg > 7:303790/1‑146 (MQ=255) tCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCTACTCCTGcc > 8:148595/1‑148 (MQ=255) gA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAgg < 8:284765/149‑1 (MQ=255) gA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAg > 5:99425/1‑148 (MQ=255) a‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGa < 5:259538/149‑1 (MQ=255) | GAGATGGGCCTGGCACCGAACATCGTCTTCAGTTCACCGTCGATCGAGATGGTGCGCGGCATGGTCGGTCAGGGTTTCGGTTTTTCGTTGCTGGTAACCCGTCCGCACTCGGAATACACCTATGACGGCCAACGCCTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGA > NC_002947/2941408‑2941704 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |