New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 60458	66 (1.250)	8 (0.160)	8/242	NT	12.9%	coding (151/1293 nt)	PP_0051	sigma‑54 dependent transcriptional regulator
	?	NC_002947	= 60509	45 (0.890)					coding (100/1293 nt)	PP_0051	sigma‑54 dependent transcriptional regulator

CATCCACATGCTCCGGGCCGCGTGGTGTGTGATGAATGTGCAATACCCGCTCCGGTACCTTGCTGTCCCACGCCTTGCGCATCGGGCAATGTTCGCCAGCCTGGTCGCACGGCACCGCGTAGTGGTGCGAAACCCTGTGGCACTTCTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/60308‑60458 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgccGCCAATGCGGCCTATCGCCGTCAGTTTGGCCGGCATGATCAGGCCCCACTGGGCGAGAAGTGCCACAGGGTTTCGCACCACTACGCGGTGCCGTGCGACCAGGCTGGCGAACATTGCCCGATGCGCAAGGCGTGGGACAGCAAGG  <  NC_002947/60509‑60365                                                                                                                                                                                                                                                                                                          CATCCACATGCTCCGGGCCGCGTGGTGTGTGATGAATGTGCAATACCCGCTCCGGTACCTTGCTGTCCCACGCCTTGCGCATCGGGCAATGTTCGCCAGCCTGGTCGCACGGCACCGCGTAGTGGTGCGAAACCCTGTGGCACTTCTCG                                                                                                                                                     >  6:256191/1‑149  ATCCACATGCTCCGGGCCGCGTGGTGTGTGATGAATGTGCAATACCCGCTCCGGTACCTTGCTGTCCCACGCCTTGCGCATCGGGCAATGTTCGCCAGCCTGGTCGCACGGCACCGCGTAGTGGTGCGAAACCCTGTGGCACTTCTCGC                                                                                                                                                    >  2:131188/1‑149  ATCCACATGCTCCGGGCCGCGTGGTGTGTGATGAATGTGCAATACCCGCTCCGGTACCTTGCTGTCCCACGCCTTGCGCATCGGGCAATGTTCGCCAGCCTGGTCGCACGGCACCGCGTAGTGGTGCGAAACCCTGTGGCACTTCTCGC                                                                                                                                                    <  2:253420/149‑1    CCACATGCTCCGGGCCGCGTGGTGTTTGATGAATGTGCAATACCCGCTCCGGTACCTTGCTGTCCCACGCCTTGCGCATCGGGCAATGTTCGCCAGCCTGGTCGCACGGCACCGCGTAGTGGTGCGAAACCCTGTGGCACTTCTCGCC                                                                                                                                                   >  7:77045/1‑148                            TGTGATGAATGTGCAATACCCGCTCCGGTACCTTGCTGTCCCACGCCTTGCGCATCGGGCAATGTTCGCCAGCCTGGTCGCACGGCACCGCGTAGTGGTGCGAAACCCTGTGGCACTTCTC                                                                                                                                                      <  1:261433/121‑1                            TGTGATGAATGTGCAATACCCGCTCCGGTACCTTGCTGTCCCACGCCTTGCGCATCGGGCAATGTTCGCCAGCCTGGTCGCACGGCACCGCGTAGTGGTGCGAAACCCTGTGGCACTTCTC                                                                                                                                                      >  2:261433/1‑121                                  GAATGTGCAATACCCGCTCCGGTACCTTGCTGTCCCACGCCTTGCGCATCGGGCAATGTTCGCCAGCCTGGTCGCACGGCACCGCGTAGTGGTGCGAAACCCTGTGGCACTTCTCGCCGCCAATGCGGCCTATCGCCGTCAGTTTGGCC                                                                                                                    >  8:98636/1‑149                                       TGCAATACCCGCTCCGGTACCTTGCTGTCCCACGCCTTGCGCATCGGGCAATGTTCGCCAGCCTGGTCGCACGGCACCGCGTAGTGGTGCGAAACCCTGTGGCACTTCTCGCCGCCAATGCGGCCTATCGCCGTCAGTTTGGCCGGCAT                                                                                                               >  2:21020/1‑149                                        GCAATACCCGCTCCGGTACCTTGCTGTCCCACGCCTTGCGCATCGGGCAATGTTCGCCAGCCTGGTCGCACGGCACCGCGTAGTGGTGCGAAACCCTGTGGCACTTCTCGCCGCCAATGCGGCCTATCGCCGTCAGTTTGGCCGGCAT                                                                                                               >  5:276706/1‑148                                                          CCTTGCTGTCCCACGCCTTGCGCATCGGGCAATGTTCGCCAGCCTGGTCGCACGGCACCGCGTAGTGGTGCGAAACCCTGTGGCACTTCTCGCCGCCAATGCGGCCTATCGCCGTCAGTTTGGCCGGCATGATCAGGCCCCACTGGGC                                                                                             <  1:21020/148‑1                                                               CTGTCCCACGCCTTGCGCATCGGGCAATGTTCGCCAGCCTGGTCGCACGGCACCGCGTAGTGGTGCGAAACCCTGTGGCACTTCTCGCCGCCAATGCGGCCTATCGCCGTCAGTTTGGCCGGCATGATCAGGCCCCACTGGGCGAGAAG                                                                                       <  6:276706/149‑1                                                               CTGTCCCACGCCTTGCGCATCGGGCAATGTTCGCCAGCCTGGTCGCACGGCACCGCGTAGTGGTGCGAAACCCTGTGGCACTTCTCGCCGCCAATGCGGCCTATCGCCGTCAGTTTGGCCGGCATGATCAGGCCCCACTGGGCGAGAA                                                                                        <  7:98636/148‑1                                                                  TCCCACGCCTTGCGCATCGGGCAATGTTCGCCAGCCTGGTCGCACGGCACCGCGTAGTGGTGCGAAACCCTGTGGCACTTCTCGCCGCCAATGCGGCCTATCGCCGTCAGTTTGGCCGGCATGATCAGGCCCCACTGGGCGAGAAGT                                                                                      <  3:7497/147‑1                                                                  TCCCACGCCTTGCGCATCGGGCAATGTTCGCCAGCCTGGTCGCACGGCACCGCGTAGTGGTGCGAAACCCTGTGGCACTTCTCGCCGCCAATGCGGCCTATCGCCGTCAGTTTGGCCGGCATGATCAGGCCCCACTGGGCGAGAAGT                                                                                      >  4:7497/1‑147                                                                                                                                                     GCCGCCAATGCGGCCTATCGCCGTCAGTTTGGCCGGCATGATCAGGCCCCACTGGGCGAGAAGTGCCACAGGGTTTCGCACCACTACGCGGTGCCGTGCGACCAGGCTGGCGAACATTGCCCGATGCGCAAGGCGTGGGACAGCAAGG  >  7:74464/1‑148                                                                                                                                                                                                                                                                                                          CATCCACATGCTCCGGGCCGCGTGGTGTGTGATGAATGTGCAATACCCGCTCCGGTACCTTGCTGTCCCACGCCTTGCGCATCGGGCAATGTTCGCCAGCCTGGTCGCACGGCACCGCGTAGTGGTGCGAAACCCTGTGGCACTTCTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/60308‑60458 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgccGCCAATGCGGCCTATCGCCGTCAGTTTGGCCGGCATGATCAGGCCCCACTGGGCGAGAAGTGCCACAGGGTTTCGCACCACTACGCGGTGCCGTGCGACCAGGCTGGCGAACATTGCCCGATGCGCAAGGCGTGGGACAGCAAGG  <  NC_002947/60509‑60365

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.