New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 401306NA (NA)4 (0.080) 4/242 NT 8.0% coding (892/1059 nt) PP_0334 transposase
?NC_002947 = 401377 48 (0.910)coding (963/1059 nt) PP_0334 transposase

CCTTCTTCGGTATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCagccag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/401160‑401306
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGGCCTTAGCTGGCTCAAGACGGAATGCGCGCCCTGGATCATCAGGCTGCGTATGTAGCCGTCACCGCGCTT  <  NC_002947/401377‑401225
                                                                                                                                                                                                                                                                                                            
CCTTCTTCGGTATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAG                                                                                                                                                         >  3:253502/1‑149
 CTTCTTCGGTATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGC                                                                                                                                                        <  7:34330/149‑1
 CTTCTTCGGTATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGC                                                                                                                                                        <  5:232715/149‑1
  TTCTTCGGTATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGC                                                                                                                                                        >  7:169261/1‑148
    CTTCGGTATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCA                                                                                                                                                      <  4:60016/148‑1
       CGGTATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAG                                                                                                                                                     <  7:86587/146‑1
         GTATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCA                                                                                                                                                      <  1:99429/143‑1
         GTATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCA                                                                                                                                                      >  2:99429/1‑143
                                                                   GCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGAGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGG                                                                                                    <  5:254797/135‑1
                                                                   GCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGAGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGG                                                                                                    >  6:254797/1‑135
                                                                                                    CCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGG                                                                                                 <  5:152059/105‑1
                                                                                                    CCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGG                                                                                                 >  6:152059/1‑105
                                                                                                                                                     CCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGGCCTTAGCTGGCTCAAGACGGAATGCGCGCCCTGGATCATCAGGCTGCGTATGTAGCCGTCACCGCGC    <  4:49189/149‑1
                                                                                                                                                     CCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGA                                                                                  >  7:146066/1‑71
                                                                                                                                                     CCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGA                                                                                  <  8:146066/71‑1
                                                                                                                                                       AGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGGCCTTAGCTGGCTCAAGACGGAATGCGCGCCCTGGATCATCAGGCTGCGTATGTAGCCGTCACCGCGCTT  >  6:75142/1‑149
                                                                                                                                                       AGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGGCCTTAGCTGGCTCAAGACGGAATGCGCGCCCTGGATCATCAGGCTGCGTATGTAGCCGTCACCGCGCTT  >  1:321179/1‑149
                                                                                                                                                       AGCCTGATCGCCGCCTCCTTGCGACCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGGCATTACCTGGCTAAAGACGGAATGACAGCCCTGGA                                    >  4:249404/1‑115
                                                                                                                                                       AGCCTGATCGACGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCATGCCTTAGCTGGCTCAAGACGGAATGCGCGCCCTGGA                                    <  3:249404/115‑1
                                                                                                                                                                                                                                                                                                            
CCTTCTTCGGTATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCagccag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/401160‑401306
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGGCCTTAGCTGGCTCAAGACGGAATGCGCGCCCTGGATCATCAGGCTGCGTATGTAGCCGTCACCGCGCTT  <  NC_002947/401377‑401225

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.