New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1862561	56 (1.060)	6 (0.120)	6/250	NT	9.9%	coding (247/1068 nt)	PP_1666	hypothetical protein
	?	NC_002947	= 1862581	54 (1.040)					coding (267/1068 nt)	PP_1666	hypothetical protein

GCCCGTACCGCGGCCACAGTCAAAGCCCTGGATACGTTGGTGCAGCGTCTGACCGGTGACCCTAAGGCCGTGCAGAGCCCTGCATTGGCCGAGCTGCGCAAGGACCCACAGCAAATCATCAACCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1862435‑1862561 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggCGGGCCGGCTTCGCTGCCCACCTGGTTGATGATTTG  <  NC_002947/1862581‑1862546                                                                                                                                                                     GCCCGTACCGCGGCCACAGTCAAAGCCCTGGATACGTTGGTGCAGCGTCTGACCGGTGACCCTAAGGCCGTGCAGAGCCCTGCATTGGCCGAGCTGCGCAAGGACCCACAGCAAATCATCAACCAGGTGGGCCGGCTTCGCTGCCCACC                >  8:282431/1‑149   CCGTACCGCGGCCACAGTCAAAGCCCTGGATACGTTGGTGCAGCGTCTGACCGGTGACCCTAAGGCCGTGCAGAGCCCTGCATTGGCCGAGCTGCGCAAGGACCCACAGCAAATCATCAACCAGGTGGGCCGGCTTCGCTGCCCACCTG              <  7:282431/149‑1                      AAAGCCCTGGGTACGTTGGTGCAGCGTCTGACCGGTGACCCTAAGGCCGTGCAGAGCCCTGCATTGGCCGAGCTGCGCAAGGACCCACAGCAAATCATCAACCAGG                                      <  5:133652/106‑1                      AAAGCCCTGGGTACGTTGGTGCAGCGTCTGACCGGTGACCCTAAGGCCGTGCAGAGCCCTGCATTGGCCGAGCTGCGCAAGGACCCACAGCAAATCATCAACCAGG                                      >  6:133652/1‑106                                ATACGTTGGTGCAGCGTCTGACCGGTGACCCTAAGGCCGTGCAGAGCCCTGCATTGGCCGAGCTGCGCAAGGACCCACAGCAAATCATCAACCAGGCGGGCCGGCTTCGCTGCCCACCTGGTTGATGATTTG  >  3:237541/1‑132                                ATACGTTGGTGCAGCGTCTGACCGGTGACCCTAAGGCCGTGCAGAGCCCTGCATTGGCCGAGCTGCGCAAGGACCCACAGCAAATCATCAACCAGGCGGGCCGGCTTCGCTGCCCACCTGGTTGATGATTTG  <  4:237541/132‑1                                                                                     TTGGCCGAGCTGCGCAAGGACCCACAGCAAATCATCAACCAGGCGGGCCGGCTTCGCTGCCCACCTGGT            <  1:56942/69‑1                                                                                     TTGGCCGAGCTGCGCAAGGACCCACAGCAAATCATCAACCAGGCGGGCCGGCTTCGCTGCCCACCTGGT            >  2:56942/1‑69                                                                                                                                                                     GCCCGTACCGCGGCCACAGTCAAAGCCCTGGATACGTTGGTGCAGCGTCTGACCGGTGACCCTAAGGCCGTGCAGAGCCCTGCATTGGCCGAGCTGCGCAAGGACCCACAGCAAATCATCAACCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1862435‑1862561 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggCGGGCCGGCTTCGCTGCCCACCTGGTTGATGATTTG  <  NC_002947/1862581‑1862546

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.