New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2085881 =	NA (NA)	9 (0.170)	9/248	NT	NA	intergenic (+590/‑5)	PP_1864/PP_1865	hypothetical protein/transposase
	?	NC_002947	2085920 =	NA (NA)					coding (35/1302 nt)	PP_1865	transposase

GCTTCAAGCCCAATGAAACAAGCGACATCAACTTGATAATGGTCGAGAACAGCAGCTCGCGAGAATACTGCCGTTGGCGGTGCTCCTCGAAAACCTGATCGACCCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2086030‑2085881 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcCGGAGTGGGTCGATCAGGTTTTCGAGGAGCAC‑CGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCCATCGCTGCATGCTGCGGCAAGACAACTGGACGA  >  NC_002947/2085920‑2086064                                                                                                                                                                                                                                                                                                          GCTTCAAGCCCAATGAAACAAGCGACATCAACTTGATAATGGTCGAGAACAGCAGCTCGCGAGAATACTGCCGTTGGCGGTGCTCCTCGAAAACCTGATCGACCCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTAC                                                                                                                                                      <  3:48208/148‑1                                                                                                        CCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGAGTGGGTCGATCAGGTTTTCGAGGAGCAC‑CGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGG                                             >  6:328538/1‑149                                                                                                              CGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCAC‑CGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTG                                        >  7:203006/1‑148                                                                                                               GGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCAC‑CGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTG                                              <  3:202264/141‑1                                                                                                               GGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCAC‑CGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTG                                              >  4:202264/1‑141                                                                                                                GCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTGCGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCAC‑CGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAA                                      <  5:180689/148‑1                                                                                                                GCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTGCGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCAC‑CGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTG                                        >  6:180689/1‑146                                                                                                                  GCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTGCGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCAC‑CGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGC                                    >  8:196834/1‑148                                                                                                                          CTGCTCCAAGGCAAGTTTGGCCATTACGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCAC‑CGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCCATCGCTGC                           <  8:203006/149‑1                                                                                                                                      AAGTTTGGCCATTGCGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCAC‑CGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCCATCGCTGCATGCTGCGGCAA               <  7:196834/149‑1                                                                                                                                                    tGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCACTCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCCATCGCTGCATGC                       >  1:227874/2‑128                                                                                                                                                    tGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCAC‑CGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCCATCGCTGCATGC                       <  2:227874/126‑1                                                                                                                                                    gGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCAC‑CGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCCATGGCTGCATGCTGCGGCAAGACAACTGGACGA  <  3:64287/147‑1                                                                                                                                                    CGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCAC‑CGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCCATCGCTGCATGCTGCGGCAAGACAACTGGACGA  <  5:163692/148‑1                                                                                                                                                     GCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCAC‑CGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCCATCGCTGCATGCTGCGGCAAG              <  3:139577/135‑1                                                                                                                                                     GCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCAC‑CGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCCATCGCTGCATGCTGCGGCAAG              >  4:139577/1‑135                                                                                                                                                                                                                                                                                                          GCTTCAAGCCCAATGAAACAAGCGACATCAACTTGATAATGGTCGAGAACAGCAGCTCGCGAGAATACTGCCGTTGGCGGTGCTCCTCGAAAACCTGATCGACCCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2086030‑2085881 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcCGGAGTGGGTCGATCAGGTTTTCGAGGAGCAC‑CGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCCATCGCTGCATGCTGCGGCAAGACAACTGGACGA  >  NC_002947/2085920‑2086064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.