New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2424212 =	97 (1.840)	5 (0.100)	5/236	NT	5.6%	intergenic (‑37/‑178)	PP_2124/yegS	glycosyl transferase/lipid kinase
	?	NC_002947	2424255 =	77 (1.570)					intergenic (‑80/‑135)	PP_2124/yegS	glycosyl transferase/lipid kinase

TGGCCTGGAAAAAACATTGGGCCGGCGCCAGGCCTGCAACTGATCGCATCGCCGGTCATTTTTTCCACACTTGGCAATCCCGGCTATGCTCAGCAAATACCCCTATTGCCATGGACGCGCCCGGCAGTGGCTCCCCCACTGCTGTCAACGGGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2424368‑2424212 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggcgcgtCCATGGCAATAGGGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAG  >  NC_002947/2424255‑2424402                                                                                                                                                                                                                                                                                                                   TGGCCTGGAAAAAACATTGGGCCGGCGCCAGGCCTGCAACTGATCGCATCGCCGGTCATTTTTTCCACACTTGGCAATCCCGGCTATGCTCAGCAAATACCCCTATTGCCATGGACGCGCCCGGCAGTGGCTCCCCCACTGCTGTCAAC                                                                                                                                                              <  7:64010/149‑1    CCTGGAAAAAACATTGGGCCGGCGCCAGGCCTGCAACTGATCGCATCGCCGGTCATTTTTTCCACACTTGGCAATCCCGGCTATGCTCAGCAAATACCCCTATTGCCATGGACGCGCCCGGCAGTGGCTCCCCCACTGCTGTCAACGGG                                                                                                                                                           >  6:266605/1‑149        GAAAAAACATTGGGCCGGCGCCAGGCCTGCAACTGATCGCATCGCCGGTCATTTTTTCCACACTTGGCAATCCCGGCTATGCTCAGCAAATACCCCTATTGCCATGGACGCGCCCGGCAGTGGCTCCCCCACTGCTGTCAACGGGCGCG                                                                                                                                                       >  8:248048/1‑149        GAAAAAACATTGGGCCGGCGCCAGGCCTGCAACTGATCGCATCGCCGGTCATTTTTTCCACACTTGGCAATCCCGGCTATGCTCAGCAAATACCCCTATTGCCATGGACGCGCCCGGCAGTGGCTCCCCCACTGCTGTCAACGGGCGCG                                                                                                                                                       >  7:237726/1‑149                                               CATCGCCGGTCATTTTTTCCACACTTGGCAATCCCGGCTATGCTCAGCAAATACCCCTATTGCCATGGACGCGCCCGGCAGTGGCTCCCCCACTGCTGTCAACGGGC                                                                                                                                                          <  2:46812/107‑1                                                                                                              CATGGACGCGCCCGGCAGTGGCTCCCCCACTGCTGTCAACGGGCGCGTCCATGGCAATAGGGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGC                                                                                 <  8:54516/117‑1                                                                                                              CATGGACGCGCCCGGCAGTGGCTCCCCCACTGCTGTCAACGGGCGCGTCCATGGCAATAGGGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGC                                                                                 >  7:54516/1‑117                                                                                                                     GCGCCCGGCAGTGGCTCCCCCACTGCT‑‑‑‑‑‑GGGCGCGTCCATGGCAATAGGGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATG‑TTTTTCCAGGCCAT                                   >  3:194110/1‑149                                                                                                                       GCCCGGCAGTGGCTCCCCCACTGCTGTCAACGGGCGCGTCCATGGCAATAGGGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCA                                         <  3:31052/148‑1                                                                                                                       GCCCGGCAGTGGCTCCCCCACTGCTGTCAACGGGCGCGTCCATGGCAATAGGGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTC                                           >  4:31052/1‑146                                                                                                                                                      GGGCGCGTCCATGGCAATAGAGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTC         <  2:194834/149‑1                                                                                                                                                       gtCGCGTCCATGGCAATAGGGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCGGGCCATGCAACGATCCGGGCAGGCCAGTGGTCG        <  4:269305/147‑1                                                                                                                                                        GCGCGTCCATGGCAATAGGGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGA       <  5:340328/149‑1                                                                                                                                                          GCGTCCATGGCAATAGGGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGA     <  1:156146/149‑1                                                                                                                                                            GTCCATGGCAATAGGGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTTGAGA     >  1:25415/1‑147                                                                                                                                                            GTCCATGGCAATAGGGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAG                                                                     >  6:307936/1‑83                                                                                                                                                             TCCATGGCAATAGGGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAG  <  5:345408/149‑1                                                                                                                                                             TCCATGGCAATAGGGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAG  >  5:27582/1‑149                                                                                                                                                                                                                                                                                                                   TGGCCTGGAAAAAACATTGGGCCGGCGCCAGGCCTGCAACTGATCGCATCGCCGGTCATTTTTTCCACACTTGGCAATCCCGGCTATGCTCAGCAAATACCCCTATTGCCATGGACGCGCCCGGCAGTGGCTCCCCCACTGCTGTCAACGGGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2424368‑2424212 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggcgcgtCCATGGCAATAGGGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAG  >  NC_002947/2424255‑2424402

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.