New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2472102 =	93 (1.760)	3 (0.080)	3/176	NT	6.5%	intergenic (+6/+143)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
	?	NC_002947	2472226 =	22 (0.600)					intergenic (+130/+19)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase

CTGGCGGGGGTGAGGCTACAGAGTTTAAAAACCGGGCGTAGTGAGATTCAGAGTTTTTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2472285‑2472102 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGG‑CCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCC  >  NC_002947/2472226‑2472370                                                                                                                                                                                                                                                                                                                                            CTGGCGGGGGTGAGGCTACAGAGTTTAAAAACCGGGCGTAGTGAGATTCAGAGTTTTTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAG                                                                                                                                                                                       <  3:340337/149‑1       ccGGTGAGGCTACAGAGTTTAAAAACCGGGCGTAGTGAGATTCAGAGTTTTTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGG                                                                                                                                                                                 <  1:296753/147‑1        GGGTGAGGCTACAGAGTTTAAAAACCGGGCGTAGTGAGATTCAGAGTTTTTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGG                                                                                                                                                                                <  7:198658/149‑1          GTGAGGCTACAGAGTTTAAAAACCGGGCGTAGTGAGATTCAGAGTTTTTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGG                                                                                                                                                                                 >  2:296753/1‑146             AGGCTACAGAGTTTAAAAACCGGGCGTAGTGAGATTCAGAGTTTTTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTA                                                                                                                                                                            <  1:19208/148‑1               GCTACAGAGTTTAAAAACCGGGCGTAGTGAGATTCAGAGTTTTTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAG                                                                                                                                                                                       <  1:243750/135‑1               GCTACAGAGTTTAAAAACCGGGCGTAGTGAGATTCAGAGTTTTTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAG                                                                                                                                                                                       >  2:243750/1‑135                    cGAGTTTAAAACCGGGGCGTCGTGAGATTCAGATGTTTTCCAGCCTGTGCCGGCCTCTTCGCGGGTACACCCGCTCCTACACCTGTTTGGGGGTGGACACACATTGGGGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAA                                                                                                                                                                    <  8:273165/148‑1                      AGTTTAAAAACCGGGCGTAGTCAGATTCACTGTGTTTACAGCCTGTGCCGGCCTCTTCGCTGTTAAACCCGCTCCTACACCTGATTGGGGGTTGACCCACTTTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGA                                                                                                                                                                  <  4:250675/149‑1                               ACCGGGCGTAGTGAGATTCAGAGTTTTTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTA                                                                                                                                                                                        <  1:333013/118‑1                               ACCGGGCGTAGTGAGATTCAGAGTTTTTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTA                                                                                                                                                                                        >  2:333013/1‑118                                                                            CTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAG                                                                                                                                                                 >  7:201329/1‑96                                                                                          CCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCC                                                                                              >  2:294988/1‑149                                                                                           CGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTA                                                                                                        >  4:300296/1‑138                                                                                           CGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTA                                                                                                        <  3:300296/138‑1                                                                                                      CTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCT                                                                                                                                                    >  7:309924/1‑83                                                                                                      CTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCT                                                                                                                                                    <  8:309924/83‑1                                                                                                                                                  GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAAGCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGG‑CCGCCCCTGTTCATCAAAAAACACC                                     >  1:92467/1‑149                                                                                                                                                    AGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGG‑CCGCCCCTGTTCATC                                               <  8:264831/137‑1                                                                                                                                                    AGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGG‑CCGCCCCTGTTCATC                                               >  7:264831/1‑137                                                                                                                                                     GGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGG‑CCGCCCCTGTTCATCAAAAAACACCTGT                                  >  6:319129/1‑149                                                                                                                                                        GCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGG‑CCGCCCCTGTTCATCAAAAAACACCTGTCCC                               <  4:340337/149‑1                                                                                                                                                          GGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGG‑CCGCCCCTGTTCATCAAAAAACACCTGTCCCAG                             <  5:71803/149‑1                                                                                                                                                            GTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGACCGCCCCTGTTCATCAAAAAACACCTG                                   <  1:192768/142‑1                                                                                                                                                            GTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGG‑CCGCCCCTGTTCATCAAAAAACACCTG                                   >  2:192768/1‑141                                                                                                                                                            GTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGG‑CCGCCCCTGTT                                                   >  8:282033/1‑125                                                                                                                                                            GTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGG‑CCGCCCCTGTT                                                   <  7:282033/125‑1                                                                                                                                                                  CCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGG‑CCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCAC                     <  7:273165/149‑1                                                                                                                                                                   CGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGG‑CCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCAC                     >  6:145690/1‑148                                                                                                                                                                        AGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGG‑CCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTC                >  6:228297/1‑148                                                                                                                                                                          AGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGG‑CCGCCCCTG                                                     >  8:91786/1‑109                                                                                                                                                                          AGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGG‑CCGCCCCTG                                                     <  7:91786/109‑1                                                                                                                                                                           GGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGG‑CCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACA            <  5:228297/149‑1                                                                                                                                                                                   aatGCTGTAAAAACTCTGAATCTCACTACGCCAGGTTTTTAAACTCTGTAGCCTCACCCCCGCGAGCATCCAGCTGGTACACCCGCGACGG‑CCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCC    <  2:269952/146‑1                                                                                                                                                                                   CAGGCTGTAAATACTGTGAATCTCACTACGCGCGGTTTTTAATCTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGG‑CCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCC    <  8:198658/149‑1                                                                                                                                                                                    AGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGG‑CCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCC   >  5:180107/1‑149                                                                                                                                                                                     GGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGG‑CCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCC  >  4:278925/1‑149                                                                                                                                                                                      GCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGG‑CCGCCCCTGTTCAACAAAAAACACCTGTCCCAGCCCGGCCCCAATC                >  6:279485/1‑134                                                                                                                                                                                                                                                                                                                                            CTGGCGGGGGTGAGGCTACAGAGTTTAAAAACCGGGCGTAGTGAGATTCAGAGTTTTTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2472285‑2472102 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGG‑CCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCC  >  NC_002947/2472226‑2472370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.