New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3849545 =	60 (1.140)	3 (0.060)	3/242	NT	5.2%	coding (1310/2268 nt)	PP_3397	hypothetical protein
	?	NC_002947	3849579 =	53 (1.050)					coding (1344/2268 nt)	PP_3397	hypothetical protein

CAGGTTGAGTGTGATCGGTACACCGACACTAGTGCTGCCAACATCGGCCTGGGCCAGCGGTGGCTGGTTGGCGGCCTCGACCGGGGCGCTGCCGACCACGATCACCGGCTCCACATCACTACCGCCATGGGCAGACTTGACCGTAACGGTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3849696‑3849545 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtagTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTAGTGTCGGTGTACCGATCACA  >  NC_002947/3849579‑3849687                                                                                                                                                                                                                                                                       CAGGTTGAGTGTGATCGGTACACCGACACTAGTGCTGCCAACATCGGCCTGGGCCAGCGGTGGCTGGTTGGCGGCCTCGACCGGGGCGCTGCCGACCCCGATCACCGGCTCCACATCACTACCGCCATGGGCAGACTTGACCGTAACGG                                                                                                                  >  3:244905/1‑149    GTTGAGTGTGATCGGTACACCGACACTAGTGCTGCCAACATCGGCCTGGGCCAGCGGTGGCTGGTTGGCGGCCTCGACCGGGGCGCTGCCGACCACGATCACCGGCTCCACATCACTACCGCCATGGGCAGACTTGACCGTAACGGTAG                                                                                                               >  6:260306/1‑149                                                                                                                 ACATCACTACCGCCATGGGCAGACTTGACCGTAACGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTAGTGTCGGTGTACCGATCACA  >  4:103590/1‑149                                                                                                                   ATCACTACCGCCATGGGCAGACTTGACCGTAACGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTA                      <  3:101095/127‑1                                                                                                                   ATCACTACCGCCATGGGCAGACTTGACCGTAACGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTA                      >  4:101095/1‑127                                                                                                                                                                                                                                                                       CAGGTTGAGTGTGATCGGTACACCGACACTAGTGCTGCCAACATCGGCCTGGGCCAGCGGTGGCTGGTTGGCGGCCTCGACCGGGGCGCTGCCGACCACGATCACCGGCTCCACATCACTACCGCCATGGGCAGACTTGACCGTAACGGTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3849696‑3849545 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtagTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTAGTGTCGGTGTACCGATCACA  >  NC_002947/3849579‑3849687

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.