New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3874587 =	45 (0.850)	4 (0.080)	4/238	NT	8.4%	coding (321/594 nt)	ltg	lytic transglycosylase
	?	NC_002947	3874627 =	45 (0.910)					coding (281/594 nt)	ltg	lytic transglycosylase

GTCAAAGCGCAGATGATCACCGGCCGCCCTTACGCCGAGGTAGTCGCCACGGCTGCGCGCCTCCACAACCTGCCGCCGGCGCTGCTGCACGCGGTGATCAAGGCCGAGTCCGGCTACAACCCCAAAGCCCGTTCGCGGGCGGGTGCAGTGGGGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3874742‑3874587 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggggttgTAGCCGGACTCGGCCTTGATCACCGCGTGCAGCAGCGCCGGCGGCAGGTTGTGGAGGCGCGCAGCCGTGGCGACTACCTCGGCGTAAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCT  >  NC_002947/3874627‑3874769                                                                                                                                                                                                                                                                                                             GTCAAAGCGCAGATGATCACCGGCCGCCCTTACGCCGAGGTAGTCGCCACGGCTGCGCGCCTCCACAACCTGCCGCCGGCGCTGCTGCACGCGGTGATCAAGGCCGAGTCCGGCTACAACCCCAAAGCCCGTTCGCGGGCGGGTGCAGT                                                                                                                                                        >  2:324379/1‑149    AAAGCGCAGATGATCACCGGCCGCCCTTACGCCGAGGTAGTCGCCACGGCTGCGCGCCTCCACAACCTGCCGCCGGCGCTGCTGCACGCGGTGATCAAGGCCGAGTCCGGCTACAACCCCAAAGCCCGTTCGCGGGCGGGTGCAGTGGG                                                                                                                                                     >  6:121436/1‑149       GCGCAGATGATCACCGGCCGCCCTTACGCCGAGGTAGTCGCCACGGCTGCGCGCCTCCACAACCTGCCGCCGGCGCTGCTGCACGCGGTGATCAAGGCCGAGTCCGGCTACAACCCCAAAGCCCGTTCGCGGGCGGGTGCAGTGGGGTT                                                                                                                                                  >  6:108791/1‑149        CGCAGATGATCACCGGCCGCCCTTACGCCGAGGTAGTCGCCACGGCTGCGCGCCTCCACAACCTGCCGCCGGCGCTGCTGCACGCGGTGATCAAGGCCGAGTCCGGCTACAACCCCAAAGCCCGTTCGCGGGCGGGTGCAGTGGGGTTG                                                                                                                                                 <  3:211331/149‑1              TGATCACCGGCCGCCCTTACGCCGAGGTAGTCGCCACGGCTGCGCGCCTCCACAACCTGCCGCCGGCGCTGCTGCACGCGGTGATCAAGGCCGAGTCCGGCTACAACCCCAAAGCCCGTTCGCGGGCGGGTGCAGTGGG                                                                                                                                                     <  8:182404/139‑1              TGATCACCGGCCGCCCTTACGCCGAGGTAGTCGCCACGGCTGCGCGCCTCCACAACCTGCCGCCGGCGCTGCTGCACGCGGTGATCAAGGCCGAGTCCGGCTACAACCCCAAAGCCCGTTCGCGGGCGGGTGCAGTGGG                                                                                                                                                     >  7:182404/1‑139                                    CGAGGTAGTCGCCACGGCTGCGCGCCTCCACAACCTGCCGCCGGCGCTGCTGCACGCGGTGATCAAGGCCGAGTCCGGCTACAACCCCAAAGCCCGTTCGCGGGCGGGTGCAGTGGG                                                                                                                                                     <  3:342767/117‑1                                    CGAGGTAGTCGCCACGGCTGCGCGCCTCCACAACCTGCCGCCGGCGCTGCTGCACGCGGTGATCAAGGCCGAGTCCGGCTACAACCCCAAAGCCCGTTCGCGGGCGGGTGCAGTGGG                                                                                                                                                     >  4:342767/1‑117                                                                                                                    ACAACCCCAAAGCCCGTTCGCGGGCGGGTGCAGTGGGGTTGTAGCCGGACTCGGCCTTGATCACCGCGTGCAGCAGCGCCGGCGGCAGGTTGTGGAGGCGCGCAGCCGTGGCGACTACCTCGGCGTAAGGGCGGCCGGTGA                                             <  1:291313/141‑1                                                                                                                    ACAACCCCAAAGCCCGTTCGCGGGCGGGTGCAGTGGGGTTGTAGCCGGACTCGGCCTTGATCACCGCGTGCAGCAGCGCCGGCGGCAGGTTGTGGAGGCGCGCAGCCGTGGCGACTACCTCGGCGTAAGGGCGGCCGGTGA                                             >  2:291313/1‑141                                                                                                                     CAACCCCAAAGCCCGTTCGCGGGCGGGTGCAGTGGGGTTGTAGCCGGACTCGGCCTTGATCACCGCGTGCAGCAGCGCCGGCGGCAGGTTGTGGAGGCGCGCA                                                                                  <  3:256923/103‑1                                                                                                                     CAACCCCAAAGCCCGTTCGCGGGCGGGTGCAGTGGGGTTGTAGCCGGACTCGGCCTTGATCACCGCGTGCAGCAGCGCCGGCGGCAGGTTGTGGAGGCGCGCA                                                                                  >  4:256923/1‑103                                                                                                                                                       GGGTTGTAGCCGGACTCGGCCTTGATCACCGCGTGCAGCAGCGCCGGCGGCAGGTTGTGGAGGCGCGCAGCCGTGGCGACTACCTCGGCGTAAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGC   <  2:289191/148‑1                                                                                                                                                       GGGTTGTAGCCGGACTCGGCCTTGATCACCGCGTGCAGCAGCGCCGGCGGCAGGTTGTGGAGGCGCGCAGCCGTGGCGACTACCTCGGCGTAAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGC   <  5:326239/148‑1                                                                                                                                                       GGGTTGTAGCCGGACTCGGCCTTGATCACCGCGTGCAGCAGCGCCGGCGGCAGGTTGTGGAGGCGCGCAGCCGTGGCGACTACCTCGGCGTAAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTG                 >  4:212910/1‑134                                                                                                                                                       GGGTTGTAGCCGGACTCGGCCTTGATCACCGCGTGCAGCAGCGCCGGCGGCAGGTTGTGGAGGCGCGCAGCCGTGGCGACTACCTCGGCGTAAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTG                 <  3:212910/134‑1                                                                                                                                                            GTAGCCGGACTCGGCCTTGATCACCGCGTGCAGCAGCGCCGGCGGCAGGTTGTGGAGGCGCGCAGCCGTGGCGACTACCTCGGCGTAAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCT  >  4:211217/1‑144                                                                                                                                                            GTAGCCGGACTCGGCCTTGATCACCGCGTGCAGCAGCGCCGGCGGCAGGTTGTGGAGGCGCGCAGCCGTGGCGACTACCTCGGCGTAAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCT  >  4:113951/1‑144                                                                                                                                                            GTAGCCGGACTCGGCCTTGATCACCGCGTGCAGCAGCGCCGGCGGCAGGTTGTGGAGGCGCGCAGCCGTGGCGACTACCTCGGCGTAAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCT  <  3:211217/144‑1                                                                                                                                                            GTAGCCGGACTCGGCCTTGATCACCGCGTGCAGCAGCGCCGGCGGCAGGTTGTGGAGGCGCGCAGCCGTGGCGACTACCTCGGCGTAAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCT  <  3:113951/144‑1                                                                                                                                                                                                                                                                                                             GTCAAAGCGCAGATGATCACCGGCCGCCCTTACGCCGAGGTAGTCGCCACGGCTGCGCGCCTCCACAACCTGCCGCCGGCGCTGCTGCACGCGGTGATCAAGGCCGAGTCCGGCTACAACCCCAAAGCCCGTTCGCGGGCGGGTGCAGTGGGGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3874742‑3874587 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggggttgTAGCCGGACTCGGCCTTGATCACCGCGTGCAGCAGCGCCGGCGGCAGGTTGTGGAGGCGCGCAGCCGTGGCGACTACCTCGGCGTAAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCT  >  NC_002947/3874627‑3874769

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.