New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4059604 =	71 (1.340)	3 (0.060)	3/238	NT	5.2%	coding (1295/1638 nt)	pgm	phosphoglucomutase
	?	NC_002947	4059694 =	42 (0.850)					coding (1205/1638 nt)	pgm	phosphoglucomutase

GATGGCTCGGTGTGGGCCACCGACAAGGACGGGTTGATCCCGGCCTTGCTGGCCGCCGAAATGACCGCCCGTACCGGGCGTAACCCGAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4059695‑4059604 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgagccaTCGCGACGCAGGAACGAAGCCCCTGCACTTTCTTCGCCACCAAAACCGAGCGAACCGTCGAACAGGCCCTGGGCGAAGAACTTGAAGCCCACCGGCACCTCATACAGATCGCGGCCCAGCCGTTGGGTAACGCGGTCGA  >  NC_002947/4059694‑4059832                                                                                                                                                                                                                                         GATGGCTCGGTGTGGGCCACCGACAAGGACGGGTTGATCCCGGCCTTGCTGGCCGCCGAAATGACCGCCCGTACCGGGCGTAACCCGAGCCATCGCGACGCAGGAACGAAGCCCCTGCACTTTCTTCGCCACCAAAACCGAGCGACCCG                                                                                    >  3:79831/1‑149    GGCTCGGTGTGGGCCACCGACAAGGACGGGTTGATCCCGGCCTTGCTGGCCGCCGAAATGACCGCCCGTACCGGGCGTAACCCGAGCCATCGCGACGCAGGAACGAAGCCCCTGCACTTTCTTCGCCACCAAAACCGAGCGAACCGTC                                                                                  >  6:320016/1‑148                              CGGGTTGATCCCGGCCTTGCTGGCCGCCGAAATGACCGCCCGTACCGGGCGTAACCCGAGCCATCGCGACGCAGGAACGAAGCCCCTGCACTTTCTTCGCCACCAAAACCGAGCGAACCGTCGAACAGGCCCTGGGCGAAGAACTTGAA                                                       <  5:320016/149‑1                                                                                      CGAGCCATCGCGACGCAGGAACGAAGCCCCTGCACTTTCTTCGCCACCAAAACCGAGCGAACCGTCGAACAGGCCCTGGGCGAAGAACTTGAAGCCCACCGGCACCTCATACAGATCGCGGCCCAGCCGTTGGGTAACGCGGTCGA  <  3:327142/146‑1                                                                                      CGAGCCATCGCGACGCAGGAACGAAGCCCCTGCACTTTCTTCGCCACCAAAACCGAGCGAACCGTCGAACAGGCCCTGGGCGAAGAACTTGAAGCCCACCGGCACCTCATACAGATCGCGGCCCAGCCGTTGGGTAACGCGGTCGA  >  4:327142/1‑146                                                                                                                                                                                                                                         GATGGCTCGGTGTGGGCCACCGACAAGGACGGGTTGATCCCGGCCTTGCTGGCCGCCGAAATGACCGCCCGTACCGGGCGTAACCCGAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4059695‑4059604 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgagccaTCGCGACGCAGGAACGAAGCCCCTGCACTTTCTTCGCCACCAAAACCGAGCGAACCGTCGAACAGGCCCTGGGCGAAGAACTTGAAGCCCACCGGCACCTCATACAGATCGCGGCCCAGCCGTTGGGTAACGCGGTCGA  >  NC_002947/4059694‑4059832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.