| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4279080 = | 71 (1.340) | 4 (0.080) | 4/242 | NT | 5.6% | coding (280/1434 nt) | PP_3750 | GntR family transcriptional regulator |
| ? | NC_002947 | 4279148 = | 66 (1.310) | coding (348/1434 nt) | PP_3750 | GntR family transcriptional regulator | |||||
GCAGTGCGTAGTTCAGGCAACTGCGCCACTGGTCGAAGGGGAACTGTGCCTTGCTCGAAGCACCCCCGACGAAGTCATAGCGCGATGGCGCCTGCAACTGGCGTTGGCTGAGCACGGTGGCGCGTTGCTGCCAGCGCTCGAGGGAGGCGGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4279233‑4279080‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgccATCGCGCTATGACTTCGTCGGGGGTGCTTCGAGCAAGGCACAGTTCCCCTTCGACCAGTGGCGCAGTTGCCTGAACTACGCACTGCGCCGCAGCCAGCGCCACCCCGAGCGCCAATTCCCGGCCCAGGGCTTGCCGGAACTGCGCG > NC_002947/4279148‑4279293 GCAGTGCGTAGTTCAGGCAACTGCGCCACTGGTCGAAGGGGAACTGTGCCTTGCTCGAAGCACCCCCGACGAAGTCATAGCGCGATGGCGCCTGCAACTGGCGTTGGCTGAGCACGGTGGCGCGTTGCTGCCAGCGCTCGAGGGAGGCG < 3:293293/149‑1 TGCGTAGTTCAGGCAACTGCGCCACTGGTCGAAGGGGAACTGTGCCTTGCTCGAAGCACCCCCGACGAAGTCATAGCGCGATGGCGCCTGCAACTGGCGTTGGCTGAGCACGGTGGCGCGTTGCTGCCAGCGCTCGATGGAGGCGGCGC > 1:211192/1‑149 CGTAGTTCAGGCAACTGCGCCACTGGTCGAAGGGGAACTGTGCCTTGCTCGAAGCACCCCCGACGAAGTCATAGCGCGATGGCGCCTGCAACTGGCGTTGGCTGAGCACGGTGGCGCGTTGCTGCCAGCGCTCGAGGGAGGCGGCGCC < 5:362597/148‑1 AGTCATAGCGCGATGGCGCCTGCAACTGGCGTTGGCTGAGCACGGTGGCGCGTTGCTGCCAGCGCTCGAGGGAGGCGGCGCCATCGCGCTATGACTTCGTCGGGGGTGTTTCGAGCAAGGCACAGTTCCC > 5:228886/1‑130 AGTCATAGCGCGATGGCGCCTGCAACTGGCGTTGGCTGAGCACGGTGGCGCGTTGCTGCCAGCGCTCGAGGGAGGCGGCGCCATCGCGCTATGACTTCGTCGGGGGTGTTTCGAGCAAGGCACAGTTCCC < 6:228886/130‑1 GCCTGCAACTGGCGTTGGCTGAGCACGGTGGCGCGTTGCTGCCAGCGCTCGAGGGAGGCGGCGCCATCGCGCTATGACTTCGTCGGGGGTGCTTCGAGCAAGGCACAGTTCCCCTTCGACCAGTGGCGCAGTTGCCTGAACTACGCACT > 5:317620/1‑149 CAACTGGCGTTGGCTGAGCACGGTGGCGCGTTGCTGCCAGCGCTCGAGGGAGGCGGCGCCATCGCGCTATGACTTCGTCGGGGGTGCTTCGAGCAAGGCACAGTTCCCCTTCGACCAGTGGCGCAGTTGCCTGAACTACGCACTGCGC < 6:317620/148‑1 GCGCCATCGCGCTATGACTTCGTCGGGGGTGCTTCGAGCAAGGCACAGTTCCCCTTCGACCAGTGGCGCAGTTGCCTGAACTACGCACTGCGCCGCAGCCAGCGCCACCCCGAGCGCCAATTCCCGGCCCAGGGCTTGCCGGAACTGCG > 1:61717/1‑149 GCCATCGCGCTATGACTTCGTCGGGGGTGCTTCGAGCAAGGCACAGTTCCCCTTCGACCAGTGGCGCAGTTGCCTGAACTACGCACTGCGCCGCAGCCAGCGCCACCCCGAGCGCCAATTCCCGGCCCAGGGCTTGCCGGAACTGCGCG < 7:226740/149‑1 GCAGTGCGTAGTTCAGGCAACTGCGCCACTGGTCGAAGGGGAACTGTGCCTTGCTCGAAGCACCCCCGACGAAGTCATAGCGCGATGGCGCCTGCAACTGGCGTTGGCTGAGCACGGTGGCGCGTTGCTGCCAGCGCTCGAGGGAGGCGGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4279233‑4279080‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgccATCGCGCTATGACTTCGTCGGGGGTGCTTCGAGCAAGGCACAGTTCCCCTTCGACCAGTGGCGCAGTTGCCTGAACTACGCACTGCGCCGCAGCCAGCGCCACCCCGAGCGCCAATTCCCGGCCCAGGGCTTGCCGGAACTGCGCG > NC_002947/4279148‑4279293 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |