New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 462062374 (1.400)5 (0.090) 5/254 NT 6.4% intergenic (+1892/‑368) PP_5652/PP_5654 hypothetical protein/phosphotriesterase
?NC_002947 = 4620650 72 (1.360)intergenic (+1919/‑341) PP_5652/PP_5654 hypothetical protein/phosphotriesterase

CTCGAAAATTAATCTCTACTCCAAGCATCGATAAAAAATAGATACTTCTAATTCCGTTTCAAATCGGATCCCGAAGTGTCCGACGGCTAGCGTAAAACGACAGCCTGGTCTAAATAAAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4620503‑4620623
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCAGGCAGAGCGAGGCTGCCTGGGATGTTTTATTTAGACCAGGCTGTCGTTTTACGCTAGCCGTCGGACACTTCGGGATCCGATTTGAAACGGAATTAGAAGTATCTATTTTTTATC  <  NC_002947/4620650‑4620532
                                                                                                                                                                                                                                                
CTCGAAAATTAATCTCTACTCCAAGCATCGATAAAAAATAGATACTTCTAATTCCGTTTCAAATCGGATCCCGAAGTGTCCGACGGCTAGCGTAAAACGACAGCCTGGTCTAAATAAAACATCCCAGGCAGAGCGAGGCTGCCTGGGAT                                                                                             <  1:284625/149‑1
        TTAATCTCTACTCCAAGCATCGATAAAAAATAGATACTTCTAATTCCGTTTCAAATCGGATCCCGAAGTGTCCGACGGCTAGCGTAAAACGACAGCCTGGTCTAAATAAAACACCCCAGGCAGAGCGAGGCTGCCTGGGATGTTTTATT                                                                                     >  5:153239/1‑149
                                                                  GATCCCGAAGTGTCCGACGGCTAGCGTAAAACGACAGCCTGGTCTAAATAAAACACCCCAGGCAGAGCGAGGCTGCCTGGGA                                                                                              >  7:161311/1‑82
                                                                  GATCCCGAAGTGTCCGACGGCTAGCGTAAAACGACAGCCTGGTCTAAATAAAACACCCCAGGCAGAGCGAGGCTGCCTGGGA                                                                                              <  8:161311/82‑1
                                                                                            TAAAACGACAGCCTGGTCTAAATAAAACATCCCAGGCAGCCTCGCTCTGCCTGGGGTGTTTTATTTAGACCAGGCTGTCGTTTTACGCTAGCCGTCGGACACTTCGGGATCCGATTTGAAACGGAATTAGAAGTATCTATTTTTTATC  >  6:153239/1‑148
                                                                                                                                                                                                                                                
CTCGAAAATTAATCTCTACTCCAAGCATCGATAAAAAATAGATACTTCTAATTCCGTTTCAAATCGGATCCCGAAGTGTCCGACGGCTAGCGTAAAACGACAGCCTGGTCTAAATAAAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4620503‑4620623
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCAGGCAGAGCGAGGCTGCCTGGGATGTTTTATTTAGACCAGGCTGTCGTTTTACGCTAGCCGTCGGACACTTCGGGATCCGATTTGAAACGGAATTAGAAGTATCTATTTTTTATC  <  NC_002947/4620650‑4620532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.