New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4682697	39 (0.740)	4 (0.080)	4/236	NT	8.8%	coding (987/1431 nt)	mltD	membrane‑bound lytic murein transglycosylase D
	?	NC_002947	= 4682724	47 (0.960)					coding (1014/1431 nt)	mltD	membrane‑bound lytic murein transglycosylase D

TGGCGATCAATGACCGTCTGGACCTTTCCCGGGTCGCGGCCTTTGCCAACATCGACGAGGACGAGCTGATCCAGCTCAACCCGGCATTCAAGAAACGCATGACCGTCGATGGCCCGAAACAGCTGCTGGTGCCCACCGCCAAGGCGCAGTTGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4682543‑4682697 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagttgctcCGGGTTGAGGTTGGACAGGCTGGCACTGAGCAACTGCGCCTTGGCGGTGGGCACCAGCAGCTGTTTCGGGCCATCGACGGTCATGCGTTTCTTGAATGCCGGGTTGAGCTGGATCAGCTCGTCCTCGTCGATGTTGGCAAAGGCCGC  <  NC_002947/4682724‑4682578                                                                                                                                                                                                                                                                                                                TGGCGATCAATGACCGTCTGGACCTTTCCCGGGTCGCGGCCTTTGCCAACATCGACGAGGTCGAGCTGATCCAGCTCAACCCGGCATTCAAGAAACGCATGACCGTCGATGGCCCGAAACAGCTGCTGGTGCCCACCGCCAAGGCGCAG                                                                                                                                                           <  3:28765/149‑1            GACCGTCTGGACCTTTCCCGGGTCGCGGCCTTTGCCAACATCGACGAGGACGAGCTGATCCAGCTCAACCCGGCATTCAAGAAACGCATGACCGTCGATGGCCCGAAACAGCTGCTGGTGCCCACCGCCAAGGCGCAGTTGCT                                                                                                                                                      >  1:300867/1‑143            GACCGTCTGGACCTTTCCCGGGTCGCGGCCTTTGCCAACATCGACGAGGACGAGCTGATCCAGCTCAACCCGGCATTCAAGAAACGCATGACCGTCGATGGCCCGAAACAGCTGCTGGTGCCCACCGCCAAGGCGCAGTTGCT                                                                                                                                                      <  2:300867/143‑1                    GGACCTTTCCCGGGTCGCGGCCTTTGCCAACATCGACGAGGACGAGCTGATCCAGCTCAACCCGGCATTCAAGAAACGCATGACCGTCGATGGCCCGAAACAGCTGCTGGTGCCCACCGCCAAGGCGCAGTTGCTCCGGGTTGAGGTTG                                                                                                                                        >  6:180328/1‑149                                             GCCAACATCGACGAGGACGAGCTGATCCAGCTCAACCCGGCATTCAAGAAACGCATGACCGTCGATGGCCCGAAACAGCTGCTGGTGCCCACCGCCAAGGCGCAGTTGCTCCGGGTTGAGGTTGGACAGGCTGGCACTGAGCAACTGC                                                                                                                <  5:180328/148‑1                                                       ACGAGGACGAGCTGATCCAGCTCAACCCGGCATTCAAGAAACGCATGACCGTCGATGGCCCGAAACAGCTGCTGGTGCCCACCGCCAAGGCGCAGTTGCT                                                                                                                                                      >  2:79451/1‑100                                                                   TGATCCAGCTCAACCCGGCATTCAAGAAACGCATGACCGTCGATGGCCCGAAACAGCTGCTGGTGCCCACCGCCAAGGCGCAGTTGCTCCGGGTTGAGGTTGGACAGGCTGGCACTGAGCAACTGCGCC                                                                                                             <  7:331939/129‑1                                                                   TGATCCAGCTCAACCCGGCATTCAAGAAACGCATGACCGTCGATGGCCCGAAACAGCTGCTGGTGCCCACCGCCAAGGCGCAGTTGCTCCGGGTTGAGGTTGGACAGGCTGGCACTGAGCAACTGCGCC                                                                                                             >  8:331939/1‑129                                                                                                                                                   CAGTTGCTCCGGGTTGAGGTTGGACAGGCTGGCACTGAGCAACTGCGCCTTGGCGGTGGGCACCAGCAGCTGTTTCGGGCCATCGACGGTCATGCGTTTCTTGAATGCCGGGTTGAGATGGATCAGCTCGTCCTCGTCGATGTTGGCA          >  4:144980/1‑148                                                                                                                                                    AGTTGCTCCGGGTTGAGGTTGGACAGGCTGGCACTGAGCAACTGCGCCTTGGCGGTGGGCACCAGCAGCTGTTTCGGGCCATCGACGGTCATGCGTTTCTTGAATGCCGGGTTGAGCTGGATCAGCTCGTCCTCGTCGATGTTGGCAAA        <  6:141175/149‑1                                                                                                                                                        GCTCCGGGTTGAGGTTGGACAGGCTGGCACTGAGCAACTGCGCCTTGGCGGTGGGCACCAGCAGCTGTTTCGGGCCATCGACGGTCATGCGTTTCTTGAATGCCGGGTTGAGCTGGATCAGCTCGTCCTCGTCGATGTTGGCAAAGGCC    >  7:151353/1‑149                                                                                                                                                          TCCGGGTTGAGGTTGGACAGGCTGGCACTGAGCAACTGCGCCTTGGCGGTGGGCACCAGCAGCTGTTTCGGGCCATCGACGGTCATGCGTTTCTTGAATGCCGGGTTGAGCTGGATCAGCTCGTCCTCGTCGATGTTGGCAAAGGCCGC  >  5:68946/1‑149                                                                                                                                                          TCCGGGTTGAGGTTGGACAGGCTGGCACTGAGCAACTGCGCCTTGGCGGTGGGCACCAGCAGCTGTTTCGGGCCATCGACGGTCATGCGTTTCTTGAATGCCGGGTTGAGCTGGATCAGCTCGTCCTCGTCGATGTTGGCAAAGGCCGC  >  6:216637/1‑149                                                                                                                                                          TCCGGGTTGAGGTTGGACAGGCTGGCACTGAGCAACTGCGCCTTGGCGGTGGGCACCAGCAGCTGTTTCGGGCCATCGACGGTCATGCGTTTCTTGAATGCCGGGTTGAGCTGGATCAGCTCGTCCTCGTCGATGTTGGCAAAGGCCGC  >  6:57364/1‑149                                                                                                                                                                                                                                                                                                                TGGCGATCAATGACCGTCTGGACCTTTCCCGGGTCGCGGCCTTTGCCAACATCGACGAGGACGAGCTGATCCAGCTCAACCCGGCATTCAAGAAACGCATGACCGTCGATGGCCCGAAACAGCTGCTGGTGCCCACCGCCAAGGCGCAGTTGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4682543‑4682697 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagttgctcCGGGTTGAGGTTGGACAGGCTGGCACTGAGCAACTGCGCCTTGGCGGTGGGCACCAGCAGCTGTTTCGGGCCATCGACGGTCATGCGTTTCTTGAATGCCGGGTTGAGCTGGATCAGCTCGTCCTCGTCGATGTTGGCAAAGGCCGC  <  NC_002947/4682724‑4682578

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.