New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4957572	48 (0.910)	7 (0.150)	4/224	NT	14.1%	intergenic (‑55/+108)	fliH/fliG	flagellar assembly protein FliH/flagellar motor switch protein
	?	NC_002947	= 4957632	43 (0.920)					intergenic (‑115/+48)	fliH/fliG	flagellar assembly protein FliH/flagellar motor switch protein

GGCTCCGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4957417‑4957572 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtaggagcgggttTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTTGAGAACATGACAGCATGCCCACCAAAGAACACCACCCCAGCGACC  <  NC_002947/4957632‑4957487                                                                                                                                                                                                                                                                                                                GGCTCCGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAG                                                                                                                                                             >  6:51973/1‑147      CGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGG                                                                                                                                                      <  2:1331/149‑1      CGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGG                                                                                                                                                      <  5:653/149‑1                                                CTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGG                                                                                                                                                       <  1:167578/106‑1                                                CTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGG                                                                                                                                                       >  2:167578/1‑106                                                           GGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCAT                                                                                                 <  2:346777/149‑1                                                                                      GTTCTTTGGTGTGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGG                                                                                           >  7:99235/1‑128                                                                                      GTTCTTTGGTGTGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGG                                                                                           <  8:99235/128‑1                                                                                      GTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGG                                                                                           >  3:330726/1‑128                                                                                      GTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGG                                                                                           <  4:330726/128‑1                                                                                                                     AACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGG                                                                                           <  7:329731/97‑1                                                                                                                     AACCATGTTCGGCAGACACGGTCCCTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGG                                                                                           >  8:329731/1‑97                                                                                                                                                 TAGGAGCGGGTTTAGCGTCGTAGGCGTCGGTCCTGGCAATGCTGGTTTTCTCTGCCGACGCATTCGCGGGTGAACCCGCTCCTAGAAGGGACCGTGTCGGCCAAACATGGTTTGAGAACATGACAGCATGCCCACCAAAGAACACCAC            <  4:336418/148‑1                                                                                                                                                      GCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTTGAGAACATGACAGCATGCCCACCAAAGAACACCACCCCAGC      <  5:292008/149‑1                                                                                                                                                         GGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTTGAGAACATGACAGCATGCCCACCAAAGAACACCACCCCAGCGAC   >  5:296547/1‑149                                                                                                                                                          GTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTTGAGAACATGACAGCATGCCCACCAAAGAACACCACCCCAGCGACC  >  4:67606/1‑149                                                                                                                                                                                                                                                                                                                GGCTCCGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4957417‑4957572 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtaggagcgggttTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTTGAGAACATGACAGCATGCCCACCAAAGAACACCACCCCAGCGACC  <  NC_002947/4957632‑4957487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.