New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5012428 =	55 (1.040)	4 (0.080)	4/242	NT	7.0%	coding (211/219 nt)	PP_5677	hypothetical protein
	?	NC_002947	5012460 =	54 (1.070)					coding (179/219 nt)	PP_5677	hypothetical protein

GAGAGCTCCTGGAGCTGATTGCCAAGCTCCGCGCCTCAGGCGCTCATCCATCACTTGAATCGGTCTTCAAGGAAGCCGAGGGCGAGTTGGAGATGTCCATCGAGTTCGTCGAACAGATGCTTGCTGGCGAGGGCGGGCTCGGTCGCAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5012577‑5012428 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaagcATCTGTTCGACGAACTCGATGGACATCTCCAACTCGCCCTCGGCTTCCTTGAAGACCGATTCAAGTGATGGATGAGCGCCTGAGGCGCGGAGCTTGGCAATCAGCTCCAGGAGCTCTCGACCCCGGGCGATGGGCATTTGAATGCTG  >  NC_002947/5012460‑5012606                                                                                                                                                                                                                                                                                                           GAGAGCTCCTGGAGCTGATTGCCAAGCTCCGCGCCTCAGGCGCTCATCCATCACTTGAATCGGTCTTCAAGGAAGCCGAGGGCGAGTTGGAGATGTCCATCGAGTTCGTCGAACAGATGCTTGCTGGCGAGGGCGGGCTCGGTCGCAAG                                                                                                                                                      >  2:715/1‑149  AGAGCTCCTGGAGCTGATTGCCAAGCTCCGCGCCTCACGCGCTCATCCATCACTTGAATCGGTCTTCAAGGAAGCCGAGGGCGAGTTGGAGATGTCCATCGAGTTCGTCGAACATATGCTTGCTGGCGAGGGCGGGCTCGGTCGCAAGC                                                                                                                                                     >  5:195381/1‑149   GAGCTCCTGGAGCTGATTGCCAAGCTCCGCGCCTCAGGCGCTCATCCATCACTTGAATCGGTCTTCAAGGAAGCCGAGGGCGAGTTGGAGATGTCCATCGAGTTCGTCGAACAGATGCTTGCTGGCGAGGGCGGGCTCGGTCGCAAGC                                                                                                                                                     <  8:184890/148‑1                       cacGCTCCGCGCCTCAGGCGCTCATCCATCACTTGAATCGGTCTTCAAGGAAGCCGAGGGCGAGTTGGAGATGTCCATCGAGTTCGTCGAACAGATGCTTGCTGGCGAGGGCGGGCTCGGTCGCAA                                                                                                                                                       <  7:54171/123‑1                       CAAGCTCCGCGCCTCAGGCGCTCATCCATCACTTGAATCGGTCTTCAAGGAAGCCGAGGGCGAGTTGGAGATGTCCATCGAGTTCGTCGAACAGATGCTTGCTGGCGAGGGCGGGCTCGGTCGCAA                                                                                                                                                       <  3:113977/126‑1                       CAAGCTCCGCGCCTCAGGCGCTCATCCATCACTTGAATCGGTCTTCAAGGAAGCCGAGGGCGAGTTGGAGATGTCCATCGAGTTCGTCGAACAGATGCTTGCTGGCGAGGGCGGGCTCGGTCGCAA                                                                                                                                                       >  4:113977/1‑126                       CAAGCTCCGCGCCTCAGGCGCTCATCCATCACTTGAATCGGTCTTCAAGGAAGCCGAGGGCGAGTTGGAGATGTCCATCGAGTTCGTCGAACAGATGCTTGCTGGCGAGGGCGGGCTCGGTCGCAA                                                                                                                                                       >  8:54171/1‑126                                                  ATCACTTGAATCGGTCTTCAAGGAAGCCGAGGGCGAGTTGGAGATGTCCATCGAGTTCGTCGAACAGATGCTTGCTGGCGAGGGCGGGCTCGGTCGCAA                                                                                                                                                       >  5:47543/1‑99                                                  ATCACTTGAATCGGTCTTCAAGGAAGCCGAGGGCGAGTTGGAGATGTCCATCGAGTTCGTCGAACAGATGCTTGCTGGCGAGGGCGGGCTCGGTCGCAA                                                                                                                                                       <  6:47543/99‑1                                                           ATCGGTCTTCAAGGAAGCCGAGGGCGAGTTGGAGATGTCCATCGAGTTCGTCGAACAGATGCTTGCTGGCGAGGGCGGGCTCGGTCGCAAGC                                                                                                                                                     >  1:234337/1‑92                                                           ATCGGTCTTCAAGGAAGCCGAGGGCGAGTTGGAGATGTCCATCGAGTTCGTCGAACAGATGCTTGCTGGCGAGGGCGGGCTCGGTCGCAAGC                                                                                                                                                     <  2:234337/92‑1                                                                                                                   AGATGCTTGCTGGCGAGGGCGGGCTCGGTCGCAAGCATCTGTTCGACGAACTCGATGGACATCTCCAACTCGCCCTCGGCTTCCTTGAAGACCGATTCAAGTGATGGATGAGCGCCTGAGGCGCGGAGCTTGGCAATCAGCTCCAGGAG                                    >  6:237580/1‑149                                                                                                                             TGGCGAGGGCGGGCTCGGTCGCAAGCATCTGTTCGACGAACTCGATGGACATCTCCAACTCGCCCTCGGCTTCCTTGAA                                                                                                >  5:87296/1‑79                                                                                                                             TGGCGAGGGCGGGCTCGGTCGCAAGCATCTGTTCGACGAACTCGATGGACATCTCCAACTCGCCCTCGGCTTCCTTGAA                                                                                                <  6:87296/79‑1                                                                                                                                 GAGGGCGGGCTCGGTCGCAAGCATCTGTTCGACGAACTCGATGGACATCTCCAACTCGCCCTCGGCTTCCTTGAAGACCGATTCAAGTGATGGATGAGCGCCTGAGGCGCGGAGCTTGGCAATCAGCTCCAGGAGCTCTCGACCCCGGG                      <  5:237580/149‑1                                                                                                                                                     GCATCTGTTCGACGAACTCGATGGACATCTCCAACTCGCCCTCGGCTTCCTTGAAGACCGATTCAAGTGATGGATGAGCGCCTGAGGCGCGGAGCTTGGCAATCAGCTCCAGGAGCTCTCGACCCCGGGCGATGGGCATTTGAATGCTG  <  7:184890/149‑1                                                                                                                                                                                                                                                                                                           GAGAGCTCCTGGAGCTGATTGCCAAGCTCCGCGCCTCAGGCGCTCATCCATCACTTGAATCGGTCTTCAAGGAAGCCGAGGGCGAGTTGGAGATGTCCATCGAGTTCGTCGAACAGATGCTTGCTGGCGAGGGCGGGCTCGGTCGCAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5012577‑5012428 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaagcATCTGTTCGACGAACTCGATGGACATCTCCAACTCGCCCTCGGCTTCCTTGAAGACCGATTCAAGTGATGGATGAGCGCCTGAGGCGCGGAGCTTGGCAATCAGCTCCAGGAGCTCTCGACCCCGGGCGATGGGCATTTGAATGCTG  >  NC_002947/5012460‑5012606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.