| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5300943 = | 62 (1.170) | 3 (0.060) | 3/238 | NT | 5.0% | coding (2830/3675 nt) | recB | Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease |
| ? | NC_002947 | 5300972 = | 55 (1.110) | coding (2801/3675 nt) | recB | Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease | |||||
AGGCCTGCCGCAGGCGGATGAGCAGATGTATCGCATGCCACACGCCGAACGTGAGCTGCTGCCAGCACGCAGACCACGCCATGCGGCTGCCGAGCACTGGTGGATCGCTTCCTACAGTGCCCTTCGTGTCGGCGATCAGACCCTCGGCGCCGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5301097‑5300943‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgacaCGAAGGGCACTGTAGGAAGCGATCCACCAGTGCTCGGCAGCCGCATGGCGTGGTCTGCGTGCTGGCAGCAGCTCACGTTCGGCGTGTGGCATGCGATACATCTGCTCATCCGCCTGCGGCAGGCCTGGGCAAGTGATGTGCGGGCAAC > NC_002947/5300972‑5301119 AGGCCTGCCGCAGGCGGATGAGCAGATGTATCGCATGCCACACGCCGAACGTGAGCTGCTGCCAGCACGCAGACCACGCCATGCGGCTGCCGAGCACTGGTGGATCGCTTCCTACAGTGCCCTTCGTGTCGGCGATCAGACCCTCGGC < 5:115362/148‑1AGGCCTGCCGCAGGCGGATGAGCAGATGTATCGCATGCCACACGCCGAACGTGAGCTGCTGCCAGCACGCAGACCACGCCATGCGGCTGCCGAGCACTGGTGGATCGCTTCCTACAGTGCCCTTCGTGTCGGCGATCAGACCCTCGGC > 6:115362/1‑148 CGGCGATCAGACCCTCGGCGCCGACACGAAGGGCACTGTAGGAAGCGATCCACCAGTGCTCGGCAGCCGCATGGCGTG < 5:89731/78‑1 CGGCGATCAGACCCTCGGCGCCGACACGAAGGGCACTGTAGGAAGCGATCCACCAGTGCTCGGCAGCCGCATGGCGTG > 6:89731/1‑78 GGCGATCAGACCCTCGGCGCCGACACGAAGGGCACTGTAGGAAGCGATCCACCAGTGCTCGGCAGCCGCATGGC < 4:138744/74‑1 cctACACGAAGGGCACTGTAGGAATCTATCCAGCAGTGCTCGGCAGCCTCATGGCGTGGTCTTCGTGCTTGCAGCAGCTCACGTTCGGCGTGTGGCATGCGATACATCTGCTCATCCGCATGCTGCAG < 5:14516/125‑1 CCGACACGAAGGGCACTGTAGGAAGCGATCCACCAGTGCTCGGCAGCCGCATGGCGTGGTCTGCGTGCTGTCAGCAGCTCACGTTCGGCGTGTGGCATGCGATACATCTGCTCATACGCCTGAGGCAG > 6:14516/1‑128 CCGACACGAAGGGCACTGTAGGAAGCGATCCACCAGTGCTCGGCAGCCGCATGGCGTGGTCTGCGTGCTGGCAGCAGCTCACGTTCGGCGTGTGGCATGCGATACATCTGCTCATCCGCCTGCGGCAGGCCTGGGCAAGTGATGTGCGG < 4:294995/149‑1 CCGACACGAAGGGCACTGTAGGAAGCGATCCACCAGTGCTCGGCAGCCGCATGGCGTGGTCTGCGTGCTGGCAGCAGCTCACGTTCGGCGTGTGGCATGCGATACATCTGC < 1:131925/111‑1 CCGACACGAAGGGCACTGTAGGAAGCGATCCACCAGTGCTCGGCAGCCGCATGGCGTGGTCTGCGTGCTGGCAGCAGCTCACGTTCGGCGTGTGGCATGCGATACATCTGC > 2:131925/1‑111 ACGAAGGGCACTGTAGGAAGCGATCCACCAGTGCTCGGCAGCCGCATGGCGTGGTCTGCGTGCTGGCAGCAGCTCACGTTCGGCGTGTGGCATGCGATACATCTGCTCATCCGCCTGCGGCAGGCCTGGGCAAGTGATGTGCGGGCAAC > 2:67906/1‑149 ACGAAGGGCACTGTAGGAAGCGATCCACCAGTGCTCGGCAGCCGCATGGCGTGGTCTGCGTGCTGGCAGCAGCTCACGTTCGGCGTGTGGCATGCGATACATCTGCTCATCCGCCTGCGGCAGGCCTGGGCAAGTGATGTGCG > 1:211442/1‑143 ACGAAGGGCACTGTAGGAAGCGATCCACCAGTGCTCGGCAGCCGCATGGCGTGGTCTGCGTGCTGGCAGCAGCTCACGTTCGGCGTGTGGCATGCGATACATCTGCTCATCCGCCTGCGGCAGGCCTGGGCAAGTGATGTGCG < 2:211442/143‑1 AGGCCTGCCGCAGGCGGATGAGCAGATGTATCGCATGCCACACGCCGAACGTGAGCTGCTGCCAGCACGCAGACCACGCCATGCGGCTGCCGAGCACTGGTGGATCGCTTCCTACAGTGCCCTTCGTGTCGGCGATCAGACCCTCGGCGCCGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5301097‑5300943‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgacaCGAAGGGCACTGTAGGAAGCGATCCACCAGTGCTCGGCAGCCGCATGGCGTGGTCTGCGTGCTGGCAGCAGCTCACGTTCGGCGTGTGGCATGCGATACATCTGCTCATCCGCCTGCGGCAGGCCTGGGCAAGTGATGTGCGGGCAAC > NC_002947/5300972‑5301119 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |