New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5608540 =	51 (0.970)	4 (0.080)	4/242	NT	8.2%	coding (1058/1272 nt)	waaA	3‑deoxy‑D‑manno‑octulosonic acid transferase
	?	NC_002947	5608576 =	41 (0.810)					coding (1022/1272 nt)	waaA	3‑deoxy‑D‑manno‑octulosonic acid transferase

GAACTGCTGTTCCTGTATGCCCTGGCCGACATTGCCTTCGTCGGTGGCAGCCTGGTGCCGACCGGTGGGCACAATCCGTTGGAGCCTGCGGCGCTGGCCTTGCCGGTGCTCATGGGGCCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5608661‑5608540 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcaGGCTCCAACGGATTGTGCCCACCGGTCGGCACCAGGCTGCCACCGACGAAGGCAATGTCGGCCA  >  NC_002947/5608576‑5608639                                                                                                                                                                                            GAACTGCTGTTCCTGTATGCCCTGGCCGACATTGCCTTCGTCGGTGGCAGCCTGGTGCCGACCGGTGGGCACAATCCGTTGGAGCCTGCGGCGCTGGCCTTGCCGGTGCTCATGGGGC                                                                      <  3:206090/118‑1 GAACTGCTGTTCCTGTATGCCCTGGCCGACATTGCCTTCGTCGGTGGCAGCCTGGTGCCGACCGGTGGGCACAATCCGTTGGAGCCTGCGGCGCTGGCCTTGCCGGTGCTCATGGGGC                                                                      >  4:206090/1‑118                                                                                      CTGCGGCGCTGGCCTTGCCGGTGCTCATGGGGCCGCAGGCTCCAACGGATTGTGCCCACCGGTCGGCACCAGGCTGCCACCGACGAA                <  5:183058/87‑1                                                                                      CTGCGGCGCTGGCCTTGCCGGTGCTCATGGGGCCGCAGGCTCCAACGGATTGTGCCCACCGGTCGGCACCAGGCTGCCACCGACGAA                >  6:183058/1‑87                                                                                       TGCGGCGCTGGCCTTGCCGGTGCTCATGGGGCCGCAGGCTCCAACGGATTGTGCCCACCGGTCGGCACCAGGCTGCCACCGACGAAGGCAATGTCGGCCA  >  8:197575/1‑100                                                                                       TGCGGCGCTGGCCTTGCCGGTGCTCATGGGGCCGCAGGCTCCAACGGATTGTGCCCACCGGGCGGCACCAGGCTGCCACCGACGAAGGCAATGTCGGCCA  <  7:197575/100‑1                                                                                                                                                                                            GAACTGCTGTTCCTGTATGCCCTGGCCGACATTGCCTTCGTCGGTGGCAGCCTGGTGCCGACCGGTGGGCACAATCCGTTGGAGCCTGCGGCGCTGGCCTTGCCGGTGCTCATGGGGCCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5608661‑5608540 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcaGGCTCCAACGGATTGTGCCCACCGGTCGGCACCAGGCTGCCACCGACGAAGGCAATGTCGGCCA  >  NC_002947/5608576‑5608639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.