New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5635894	50 (0.950)	4 (0.080)	4/238	NT	7.4%	coding (262/1803 nt)	PP_4948	acyl‑CoA dehydrogenase family protein
	?	NC_002947	= 5635919	53 (1.070)					coding (287/1803 nt)	PP_4948	acyl‑CoA dehydrogenase family protein

AAACCTTCGATGCGGCACTGACCACCGCCCGCACCATCGCCGAAAAGTATTTCGCCCCGCACAACCGCAAGGCCGACGAAAACGAACCACGCTACGTGGACGGCCGCGCCGAGCTGATCCCCGAAGTTAAGCCCGCCGTCGATGCCTTCCTCGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5635739‑5635894 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctcgaagTCCCGGTTGGCGTTGAGGAAGCCGGCTTCGAGGAAGGCATCGACGGCGGGCTTAACTTCGGGGATCAGCTCGGCGCGGCCGTCCACGTAGCGTGGTTCGTTTTCGTCGGCCTTGCGGTTGTGCGGGGCGAAATACTTTTCGGCGAT  <  NC_002947/5635919‑5635774                                                                                                                                                                                                                                                                                                                AAACCTTCGATGCGGCACTGACCACCGCCCGCACCATCGCCGAAAAGTATTTCGCCCCGCACAACCGCAAGGCCGATGAAAACGAACCACGCTACGTGGACGGCCGCGCCGAGCTGATCCCCGAAGTTAAGCCCGCCGTCGATGCCTTC                                                                                                                                                           <  3:282136/149‑1  AACCTTCGATGCGGCACTGACCACCGCCCGCACCATCGCCGAAAAGTATTTCGCCCCGCACAACCGCAAGGCCGACGAAAACGAACCACGCTACGTGGACGGCCGCGCCGAGCTGATCCCCGAAGTTAAGCCCGCCGTCGATGCCTTCC                                                                                                                                                          <  4:6218/149‑1   ACCTTCGATGCGGCACTGACCACCGCCCGCACCATCGCCGAAAAGTATTTCGCCCCGCACAACCGCAAGGCCGACGAAAACGAACCACGCTACGTGGACGGCCGCGCCGAGCTGATCCCCGAAGTTAAGCCCGCCGTCGATGCCTTCCT                                                                                                                                                         <  3:165988/149‑1    CCTTCGATGCGGCACTGACCACCGCCCGCACCATCGCCGAAAAGTATTTCGCCCCGCACAACCGCAAGGCCGACGAAAACGAACCACGCTACGTGGACGGCCGCGCCGAGCTGATCCCCGAAGTTAAGCCCGCCGTCGATGCCTTCCTC                                                                                                                                                        <  8:15040/149‑1      TTCGATGCGGCACTGACCACCGCCCGCACCATCGCCGAAAAGTATTTCGCCCCGCACAACCGCAAGGCCGACGAAAACGAACCACGCTACGTGGACGGCCGCGCCGAGCTGATCCCCGAAGTTAAGCCCGCCGTCGATGCCTTCCTCG                                                                                                                                                       >  2:338517/1‑148        CGATGCGGCACTGACCACCGCCCGCACCATCGCCGAAAAGTATTTCGCCCCGCACAACCGCAAGGCCGACGAAAACGAACCACGCTACGTGGACGGCCGCGCCGAGCTGATCCCCGAAGTTAAGCCCGCCGTCGATGCCTTCCTCGAA                                                                                                                                                     <  8:76497/148‑1        CGATGCGGCACTGACCACCGCCCGCACCATCGCCGAAAAGTATTTCGCCCCGCACAACCGCAAGGCCGACGAAAACGAACCACGCTACGTGGACGGCCGCGCCGAGCTGATCCCCGAAGTTAAGCCCGCCGTCGATGCCTTCCTCGAA                                                                                                                                                     <  6:140939/148‑1               GCACTGACCACCGCCCGCACCATCGCCGAAAAGTATTTCGCCCCGCACAACCGCAAGGCCGACGAAAACGAACCACGCTACGTGGACGGCCGCGCCGAGCTGATCCCCGAAGTTAAGCCCGCCGTCGATGCCTTC                                                                                                                                                           >  8:309115/1‑135               GCACTGACCACCGCCCGCACCATCGCCGAAAAGTATTTCGCCCCGCACAACCGCAAGGCCGACGAAAACGAACCACGCTACGTGGACGGCCGCGCCGAGCTGATCCCCGAAGTTAAGCCCGCCGTCGATGCCTTC                                                                                                                                                           <  7:309115/135‑1                                 ACCATCGCCGAAAAGTATTTCGCCCCGCACAACCGCAAGGCCGACGAAAACGAACCACGCTACGTGGACGGCCGCGCCGAGCTGATCCCCGAAGTTAAGCCCGCCGTCGATGCCTTCCTCGAAGTCCCGGTTGGCGTTGAGGAAGCCGG                                                                                                                           >  1:347716/1‑149                                           AAAAGTATTTCGCCCCGCACAACCGCAAGGCCGACGAAAACGAACCACGCTACGTGGACGGCCGCGCCGAGCTGATCCCCGAAGTTAAGCCCGCCGTCGATGCCTTCCTCGAAGTCCCGGTTGGCGTTGAGGAAGCCGGCTTCGA                                                                                                                     >  1:319877/1‑145                                           AAAAGTATTTCGCCCCGCACAACCGCAAGGCCGACGAAAACGAACCACGCTACGTGGACGGCCGCGCCGAGCTGATCCCCGAAGTTAAGCCCGCCGTCGATGCCTTCCTCGAAGTCCCGGTTGGCGTTGAGGAAGCCGGCTTCGA                                                                                                                     <  2:319877/145‑1                                            AAAGTATTTCGCCCCGCACAACCGCAAGGCCGACGAAAACGAACCACGCTACGTGGACGGCCGCGCCGAGCTGATCCCCGAAGTTAAGCCCGCCGTCGATGCCTTCCTCGAAGTCCCGGTTGGCGTTGAGGAAGCCGGCTTCGAGGAA                                                                                                                 <  2:347716/148‑1                                                                                                                                                      CTCGAAGTCCCGGTTGGCGTTGAGGAAGCCGGCTTCGAGGAAGGCATCGACGGCGGGCTTAACTTCGGGGATCAGCTCGGCGCGGCCGTCCACGTAGCGTGGTTCGTTTTCGTCGGCCTTGCGGTTGTGCGGGGCGAAATACTTTTCGG      >  1:339901/1‑149                                                                                                                                                        CGAAGTCCCGGTTGGCGTTGAGGAAGCCGGCTTCGAGGAAGGCATCGACGGCGGGCTTAACTTCGGGGATCAGCTCGGCGCGGCCGTCCACGTAGCGTGGTTCGTTTTCGTCGGCCTTGCGGTTGT                           >  6:362456/1‑126                                                                                                                                                        CGAAGTCCCGGTTGGCGTTGAGGAAGCCGGCTTCGAGGAAGGCATCGACGGCGGGCTTAACTTCGGGGATCAGCTCGGCGCGGCCGTCCACGTAGCGTGGTTCGTTTTCGTCGGCCTTGCGGTTGT                           <  5:362456/126‑1                                                                                                                                                          AAGTCCCGGTTGGCGTTGAGGAAGCCGGCTTCGAGGAAGGCATCGACGGCGGGCTTAACTTCGGGGATCAGCTCGGCGCGGCCGTCCACGTAGCGTGGTTCGTTTTCGTCGGCCTTGCGGTTGTGCGGGGCGAAATACTTTTCGGCGAT  >  3:30761/1‑149                                                                                                                                                                                                                                                                                                                AAACCTTCGATGCGGCACTGACCACCGCCCGCACCATCGCCGAAAAGTATTTCGCCCCGCACAACCGCAAGGCCGACGAAAACGAACCACGCTACGTGGACGGCCGCGCCGAGCTGATCCCCGAAGTTAAGCCCGCCGTCGATGCCTTCCTCGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5635739‑5635894 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctcgaagTCCCGGTTGGCGTTGAGGAAGCCGGCTTCGAGGAAGGCATCGACGGCGGGCTTAACTTCGGGGATCAGCTCGGCGCGGCCGTCCACGTAGCGTGGTTCGTTTTCGTCGGCCTTGCGGTTGTGCGGGGCGAAATACTTTTCGGCGAT  <  NC_002947/5635919‑5635774

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.