| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5638366 = | 50 (0.950) | 3 (0.060) | 3/240 | NT | 6.2% | coding (900/1443 nt) | PP_4949 | TldD/PmbA family peptidase |
| ? | NC_002947 | 5638409 = | 44 (0.880) | coding (943/1443 nt) | PP_4949 | TldD/PmbA family peptidase | |||||
AGGCCAGAGCGGAACTGCGACAGCGCGCCACCCAGCGGGCGCAGCAGCAGGCCGTCGCGTATCAGGAACGCTTTGCTGGCCGGGGTGCCGTCGTCGTCATGACTGTAGCTGGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5638482‑5638366‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccagcAAAGCGTTCCTGATACGCGACGGCCTGCTGCTGCGCCCGCTGGGTGGCGCGCTGTCGCAGTTCCGCTCTGGCCTGGACGGCGTGGCCAACAGCCGTGCCTGCGGCTGGAACCGCGCGCCGATCGACCGCATGGCCAACCTCAACAT > NC_002947/5638409‑5638554 AGGCCAGAGCGGAACTGCGACAGCGCGCCACCCAGCGGGCGCAGCAGCAGGCCGTCGCGTATCAGGAACGCTTTGCTGGCCGGGGTGCCGTCGTCGTCATGACTGTAGCTGG > 2:308619/1‑112 TTTGCTGGCCGGGGTGCCGTCGTCGTCATGACTGTAGCTGGCCAGCAAAGCGTTCCTGATACGCGACGGCCTGCTGCTGCGCCCGCTGGGTGGCGCGCTGTC < 3:121259/102‑1 TTTGCTGGCCGGGGTGCCGTCGTCGTCATGACTGTAGCTGGCCAGCAAAGCGTTCCTGATACGCGACGGCCTGCTGCTGCGCCCGCTGGGTGGCGCGCTGTC > 4:121259/1‑102 GCTGGCCGGGGTGCCGTCGTCGTCATGAGTGTAGCTGGCCAGCAAAGCGTTCCTGATACGCGACGGCCTGCTGCTGCGCCCGCTGGGTGGCGCGCTGTCGCAGTTCCGCTCTGGCCTGGACGGCGTGGCCAACAGCCGTGCCTGCGGCT > 1:198054/1‑149 CAGCAAAGCGTTCCTGATACGCGACGGCCTGCTGCTGCGCCCGCTGGGTGGCGCGCTGTCGCAGTTCCGCTCTGGCCTGGACGGCGTGGCCAACAGCCGTGCCTGCGGCTGGAACCGCGCGCCGATCGACCGCATGGCCAgatcgga > 3:232322/1‑140 CAGCAAAGCGTTCCTGATACGCGACGGCCTGCTGCTGCGCCCGCTGGGTGGCGCGCTGTCGCAGTTCCGCTCTGGCCTGGACGGCGTGGCCAACAGCCGTGCCTGCGGCTGGAACCGCGCGCCGATCGACCGCATGGC < 4:232322/138‑1 AGCAAAGCGTTCCTGATACGCGACGGCCTGCTGCTGCGCCCGCTGGGTGGCGCGCTGTCGCAGTTCCGCTCTGGCCTGGACGGCGTGGCCAACAGCCGTGCCTGCGGCTGGAACCGCGCGCCGATCGACCGCATGGCCAACCTCAACAT < 2:198054/149‑1 AGCAAAGCGTTCCTGATACGCGACGGCCTGCTGCTGCGCCCGCTGGGTGGCGCGCTGTCGCAGTTCCGCTCTGGCCTGGACGGCGTGGCCAACAGCCGTGCCTGCGGCTGGAACCGCGCGCCGATCGAC > 3:26572/1‑129 AGCAAAGCGTTCCTGATACGCGACGGCCTGCTGCTGCGCCCGCTGGGTGGCGCGCTGTCGCAGTTCCGCTCTGGCCTGGACGGCGTGGCCAACAGCCGTGCCTGCGGCTGGAACCGCGCGCCGATCGAC < 4:26572/129‑1 AGGCCAGAGCGGAACTGCGACAGCGCGCCACCCAGCGGGCGCAGCAGCAGGCCGTCGCGTATCAGGAACGCTTTGCTGGCCGGGGTGCCGTCGTCGTCATGACTGTAGCTGGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5638482‑5638366‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccagcAAAGCGTTCCTGATACGCGACGGCCTGCTGCTGCGCCCGCTGGGTGGCGCGCTGTCGCAGTTCCGCTCTGGCCTGGACGGCGTGGCCAACAGCCGTGCCTGCGGCTGGAACCGCGCGCCGATCGACCGCATGGCCAACCTCAACAT > NC_002947/5638409‑5638554 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |