New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5655848	78 (1.480)	4 (0.080)	4/238	NT	5.3%	coding (1847/1998 nt)	tktA	transketolase A
	?	NC_002947	= 5655877	69 (1.390)					coding (1818/1998 nt)	tktA	transketolase A

ATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTCACCGTAGGTGGTCATGCCGATGATACGACCTTCCAGGCCGACGTACTTGTACCAGAAGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5655696‑5655848 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagtcggTGCGCGCATCGCCATCGAAGCTGCCCACGCCGACTTCTGGTACAAGTACGTCGGCCTGGAAGGTCGTATCATCGGCATGACCACCTACGGTGAGTCGGCGCCGGCTTCGGCATTGTTCGAAGAGTTTGGCTTCACCCTGGAGAACAT  <  NC_002947/5655877‑5655731                                                                                                                                                                                                                                                                                                              ATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCTAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTCACCGTAGGTGGTCATGCCGATGATACGACCTTCCAGGCCGACGTACTTGTACCAGAAG                                                                                                                                                         <  7:284866/149‑1     GTCTTCCAGCAGCTCTTGGGCAGTACCGAGTATGTTCTCCAGGGTTAATCTAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTCACCGTAGGTGGTCATGCCGATGATACGACCTTCCATGCCGACGTACTTGTACCAGAAGTCGG                                                                                                                                                     <  6:52642/149‑1            AGCAGCTCTTCGGCAGTACCGAGGATGTTCTAAAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTCACCGTAGGTGGTCATGCCGATGATACGACCTTCCAGGCCGACGTACTTGTACCAGAAGTCGGTGCGCG                                                                                                                                               >  4:283430/1‑148                                            CAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTCACCGTAGGTGGTCATGCCGATGATACGACCTTCCAGGCCGACGTACTTGTACCAGAAGTCGGTGCGCGCATCGCCATCGAAGCTGCCCACGCCGACTTCTG                                                                                                              <  3:283430/149‑1                                                                   ACAATGCCGAAGCCGGCGCCGACTCACCGTAGGTGGTCATGCCGATGATACGACCTTCCAGGCCGACGTACTTGTACCAGAAGTCGGTGCGCGCATCGCCATCGAAGCTGCCCACGCCGACTTC                                                                                                                <  7:155277/124‑1                                                                   ACAATGCCGAAGCCGGCGCCGACTCACCGTAGGTGGTCATGCCGATGATACGACCTTCCAGGCCGACGTACTTGTACCAGAAGTCGGTGCGCGCATCGCCATCGAAGATGCCCACGCCGACTTC                                                                                                                >  8:155277/1‑124                                                                                                                                                  GAAGTCGGTGCGCGCATCGCCATCGAAGCTGCCCACGCCGACTTCTGGTACAAGTACGTCGGCCTGGAAGGTCGTATCATCGGCATGACCACCTACGGTGAGTCGGCGCCGGCTTCGGCATTGTTCGAAGAGTTTGGCTTCACCCTGGA        <  1:280500/149‑1                                                                                                                                                  GAAGTCGGTGCGCGCATCGCCATCGAAGCTGCCCACGCCGACTTCTGGTACAAGTACGTCGGCCTGGAAGGTCGTATCATCGGCATGACCACCTACGGTGAGTCGGCGCCGGCTTCGGCATTGTTCGAAGAGTTTGGCTTCACCCTGGA        <  4:155505/149‑1                                                                                                                                                  GAAGTCGGTGCGCGCATCGCCATCGAAGCTGCCCACGCCGACTTCTGGTACAAGTACGTCGGCCTGGAAGGTCATATCATCGGCATGACCACCTACGGTGAGTCGGCGCCGGCTTCGG                                       <  5:189827/118‑1                                                                                                                                                  GAAGTCGGTGCGCGCATCGCCATCGAAGCTGCCCACGCCGACTTCTGGTACAAGTACGTCGGCCTGGAAGGTCATATCATCGGCATGACCACCTACGGTGAGTCGGCGCCGGCTTCGG                                       >  6:189827/1‑118                                                                                                                                                  GAAGTCGGTGCGCACATCGCCATCGAAGCTGCCCACGCCGACTTCTGGTACAAGTACGTCGGCCTGGAAGGTCGTATCATCGGCATGACCACCTACGGTGAGTCGGCGCCGGCTTCGGCATTGTTCGAAGAGTTTGGCTTCACCCTGGA        <  6:322491/149‑1                                                                                                                                                   AAGTCGGTGCGCGCATCGCCATCGAAGCTGCCCACGCCGACTTCTGGTACAAGTACGTCGGCCTGGAAGGTCGTATCATCGGCATGACCACCTACGGTGAGTCGGCGCCGGCTTCGGCATTGTTCGAAGAGTTTGGCTTCACCCTGGAG       <  4:217245/149‑1                                                                                                                                                     GTCGGTGCGCGCATCGCCATCGAAGCTGCCCACGCCGACTTCTGGTACAAGTACGTCGGCCTGGAAGGTCGTATCATCGGCATGACCACCTACGGTGAGTCGGCGCCGGCTTCGGCATTGTTCGAAGAGTTTGGCTTCACCCTGGAGAA     >  7:123677/1‑149                                                                                                                                                        GGTGCGCGCATCGCCATCGAAGCTGCCCACGCCGACTTCTGGTACAAGTACGTCGGCCTGGAAGGTCGTATCATCGGCATGACCACCTACGGTGAGTCGGCGCCGGCTTCGGCATTGTTCGAAGAGTTTGGCTTCACCCTGGAGAACAT  <  6:129701/149‑1                                                                                                                                                                                                                                                                                                              ATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTCACCGTAGGTGGTCATGCCGATGATACGACCTTCCAGGCCGACGTACTTGTACCAGAAGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5655696‑5655848 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagtcggTGCGCGCATCGCCATCGAAGCTGCCCACGCCGACTTCTGGTACAAGTACGTCGGCCTGGAAGGTCGTATCATCGGCATGACCACCTACGGTGAGTCGGCGCCGGCTTCGGCATTGTTCGAAGAGTTTGGCTTCACCCTGGAGAACAT  <  NC_002947/5655877‑5655731

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.