New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5965485	49 (0.930)	3 (0.060)	3/244	NT	6.3%	coding (679/696 nt)	had	(S)‑2‑haloacid dehalogenase
	?	NC_002947	= 5965530	42 (0.830)					intergenic (+28/+72)	had/PP_5232	(S)‑2‑haloacid dehalogenase/hypothetical protein

CGGTGCACATCGGCGATCACCCTGGCGATGACATTGCCGGTGCCCAGCGCGCCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5965333‑5965485 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtgcCCGCGAATGGGCCGCAAAGCGGCTCCCGTCAGCGCCAGCGCGCGAGCACGTCGGGCAGCTGCGACAGGCGCTGGATTTCGGCATCCGGCGCCTGATCGCCAGTCCAGGCCTTGCCCTGCGGGTTGAACCACACCGCGCGCAAACCG  <  NC_002947/5965530‑5965385                                                                                                                                                                                                                                                                                                             CGGTGCACATCGGCGATCACCCTGGCGATGACATTGCCGGTGCCCAGCGCGCCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGAC                                                                                                                                                        <  5:1867/149‑1       ACATCGGCGATCACCCTGGCGATGACATTGCCGGTGCCCAGCGCGCCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCCC                                                                                                                                                  >  3:115064/1‑149                 TCACCCTGGCGATGACATTGCCGGTGCCCAGCGCGCCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGAC                                                                                                                                                        >  3:218583/1‑133                 TCACCCTGGCGATGACATTGCCGGTGCCCAGCGCGCCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGAC                                                                                                                                                        <  4:218583/133‑1                                                            CGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCCCGCGAATGGGCCGCAAAGCGGCTCCCGTCAGCGCCAGCGCGCGAGCACGTCGG                                                                                              <  4:115064/148‑1                                                                        TTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCCCGCGAATGGGCCGCAAAGCGGCTCCCGTCAGCGCCAGCGCGCGAGCACGTC                                                                                                >  3:162511/1‑134                                                                        TTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCCCGCGAATGGGCCGCAAAGCGGCTCCCGTCAGCGCCAGCGCGCGAGCACGTC                                                                                                <  4:162511/134‑1                                                                                                                                                     CGTGCCCGCGAATGGGCCGCAAAGCGGCTCCCGTCAGCGCCAGCGCGCGAGCGCGACGGGCAGCTGCGACAGGCGCTGGATTTCGGCATCCGGCGCCTGATCGCCAGTCCAGGCCTTGCCCTGCGGGTTGAACCACACCGCGCGCAAAC    >  7:167370/1‑149                                                                                                                                                     CGTGCCCGCGAATGGGCCGCAAAGCGGCTCCCGTCAGCGCCAGCGCGCGAGCACGTCGGGCAGCTGCGACAGGCGCTGGATTTCGGCATCCGGCGCCTGATCGCCAGTCCAGGCCTTGCCCTGCGGGTTGAACCACACCGCGCGCAAAC    >  1:156160/1‑149                                                                                                                                                       TGCCCGCGAATGGGCCGCAAAGCGGCTCCCGTCAGCGCCAGCGCGCGAGCACGTCGGGCAGCTGCGACAGGCGCTGGATTTCGGCATCCGGCGCCTGATCGCCAGTCCAGGCCTTGCCCTGCGGGTTGAACCACACCGCGCGCAAACCG  <  2:148293/149‑1                                                                                                                                                                                                                                                                                                             CGGTGCACATCGGCGATCACCCTGGCGATGACATTGCCGGTGCCCAGCGCGCCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5965333‑5965485 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtgcCCGCGAATGGGCCGCAAAGCGGCTCCCGTCAGCGCCAGCGCGCGAGCACGTCGGGCAGCTGCGACAGGCGCTGGATTTCGGCATCCGGCGCCTGATCGCCAGTCCAGGCCTTGCCCTGCGGGTTGAACCACACCGCGCGCAAACCG  <  NC_002947/5965530‑5965385

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.