New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6113440 =	56 (1.060)	4 (0.080)	4/242	NT	6.8%	coding (570/1446 nt)	clsA	cardiolipin synthase
	?	NC_002947	6113474 =	57 (1.130)					coding (604/1446 nt)	clsA	cardiolipin synthase

CCGCCGATGAAGCCGAGCAAGCCATCCACCACCACAATCTTGCGATGGTTGCGGAAGTTCACCTGGAAGCGGTTGAACCAGCCGCGACGTGTGGCGAATGCATGGATCTGCACACCGCCGTCACGCAGCACCTGGCTGTAGCTGGACG‑GC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6113589‑6113440 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacg‑gcGGTGTGCAGATCCATGCATTCGCCACACGTCGCGGCTGGTTCAACCGCTTCCAGGTGAACTTCCGCAACCATCGCAAGATTGTGGTGGTGGATGGCTTGCTCGGCTTCATCGGCGGCCACAATGTGGGAGACGAGTACCTGGGT  >  NC_002947/6113474‑6113617                                                                                                                                                                                                                                                                                                         CCGCCGATGAAGCCGAGCAAGCCATCCACCACCACAATCTTGCGATGGTTGCGGAAGTTCACCTGGAAGCGGTTGAACCAGCCGCGACGTGTGGCGAATGCATGGATCTGCACACCGCCGTCACGCAGCACCTGGCTGTAGCTGGACG‑G                                                                                                                                                   <  5:25734/149‑1                                                                                                                 CACCGCCGTCACGCAGCACCTGGCTGTAGCTGGACG‑GCGGTGTGCAGATCCATGCATTCGCCACACGTCGCGGCT‑GTTCAACCGCTTCCAGGTGAACTTCCGCAACCATCGCAAGATTGTGGTGGTGGATGGCTTGCTCGGCTTC                                      <  1:159923/145‑1                                                                                                                 CACCGCCGTCACGCAGCACCTGGCTGTAGCTGGACG‑GCGGTGTGCAGATCCATGCATTCGCCACACGTCGCGGCT‑GTTCAACCGCTTCCAGGTGAACTTCCGCAACCATCGCAAGATTGTGGTGGTGGATGGCTTGCTCGGCTTC                                      >  2:159923/1‑145                                                                                                                  ACCGCCGTCACGCAGCACCTGGCTGTAGCTGGACGAGCGGTGTGCAGATCCATGCATTCGCCACCCGTCCCGGCTGGTTCAACCGCTGCCAGTTGACCTTCCGCAACCATCGCAAGATTGTGGTGGTGCATGGCTTGCTCGGCTACATC                                   >  1:227690/1‑149                                                                                                                   CCGCCGTCACGCAGCACCTGGCTGTAGCTGGACG‑GCGGTGTGCAGATCCATGCATTCGCCACACGTCGCGGCTGGTTCAACCGCTTCCAGGTGAACTTCCGCAACCATCGCAAGATTGTGGTGGTGGATGGCTTGCTCGGCTTCATCGG                                 >  2:87467/1‑149                                                                                                                                                  ACG‑GCGGTGTGCAGATCCATGCATTCGCCACACGTCGCGGCTGGTTCAACCGCTTCCAGGTGAACTTCCGCAACCATCGCAAGATTGTGGTGGTGGATGGCTTGCTCGGCTTCATCGGCGGCCACAATGTGGGAGACGAGTACCTGGGT  <  8:295371/149‑1                                                                                                                                                  ACG‑GCGGTGTGCAGATCCATGCATTCGCCACACGTCGCGGCTGGTTCAACCGCTTCCAGGTGAACTTCCGCAACCATCGCAAGATTGTGGTGGTGGATGGCTTGCTCGGCTTCATCGGCGGCCACAATGTGGGAGACGAGTACCTGGG   <  1:190523/148‑1                                                                                                                                                                                                                                                                                                         CCGCCGATGAAGCCGAGCAAGCCATCCACCACCACAATCTTGCGATGGTTGCGGAAGTTCACCTGGAAGCGGTTGAACCAGCCGCGACGTGTGGCGAATGCATGGATCTGCACACCGCCGTCACGCAGCACCTGGCTGTAGCTGGACG‑GC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6113589‑6113440 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacg‑gcGGTGTGCAGATCCATGCATTCGCCACACGTCGCGGCTGGTTCAACCGCTTCCAGGTGAACTTCCGCAACCATCGCAAGATTGTGGTGGTGGATGGCTTGCTCGGCTTCATCGGCGGCCACAATGTGGGAGACGAGTACCTGGGT  >  NC_002947/6113474‑6113617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.