| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 43823 = | 39 (0.740) | 4 (0.080) | 4/236 | NT | 9.2% | coding (1702/1998 nt) | cadA‑I | cadmium translocating P‑type ATPase |
| ? | NC_002947 | 43868 = | 43 (0.880) | coding (1657/1998 nt) | cadA‑I | cadmium translocating P‑type ATPase | |||||
ATTCTGGTGGATGATCGATCGCGTGTGACGGCTCAGCCCCACCGCAAATGGGAGTTGCCTGATGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTCCCCACGCTTCATCTAAGCCAACTTGTTTGGCTACAGCCTCTGC > NC_002947/43677‑43970 | catcgaacgcatggtcatgatttctggagaccacaaccgcgatgcagaggctgtagccaaacaagttggcttagatgaagcgtggggagacctgatgccggaagacaaggtcaaggccatcaaaaacctgcgccttagcgccaaggTgg > 5:270083‑M1/147‑149 (MQ=255) atcgaacgcatggtcatgatttctggagaccacaaccgcgttgcagaggctgtagccaaacaagttggcttagatgaagcgtggggagacctgatgccggaagacaaggtcaaggccatcaaaaacctgcgccttagcgccaaggTGGc < 5:130161‑M1/4‑1 (MQ=255) atagaaagcatggtcatgatttctggagaccacaaccgcgttgcagaggctgtagccaaacatgttggcttagatgaagcgtggggagacctgatgccggaagacaaggtcaaggccatcaaaaacctgcgccttagcgccaaggTGGc > 2:253590‑M1/146‑149 (MQ=255) tcgaacgcatggtcatgatttctggagaccacaaccgcgttgcagaggctgtagccaaacaagttggcttagatgaagcgtggggagacctgatgccggaagacaaggtcaaggccatcaaaaacctgcgccttagcgccaaggTGGc < 6:334512‑M1/4‑1 (MQ=255) ggggttgatCGTTCGCGTGTGCCGGCTCAGCCCCACCGCAAATGGGTTTTGCCGGATGTGGTCAGCCATAAGCGCTATTTTAGCCGTTTCCTGGGTAAAATCTTATCCTGCTTCCCCCTTTGTCATACCAACGCTCGAACTGGCCa < 7:221384/141‑1 (MQ=255) tgatCGATCGCGTGTGACGGCTCAGCCCCACCGCAAATGGGAGTTGCCTGATGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAggg > 5:219740/1‑149 (MQ=255) tcgatcgCGTGTGACGGCTCAGCCCCACCGCAAATGGGAGTTGCCTGATGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGca > 6:342878/1‑149 (MQ=255) tcatgatttctggagaccacaaccgcgttgcagaggctgtagccaaacaagttggcttagatgaagcgtggggagacctgatgccggaagacaaggtcaaggccatcaaaaacctgcgccttagcgccaaggTgg < 7:19798‑M1/3‑1 (MQ=255) tcatgatttctggagaccacaaccgcgttgcagaggctgtagccaaacaagttggcttagatgaagcgtggggagacctgatgccggaagacaaggtcaaggccatcaaaaacctgcgccttagcgccaaggTgg > 8:19798‑M1/133‑135 (MQ=255) gatcgCGTGTGACGGCTCAGCCCCACCGCAAATGGGAGTTGCCTGATGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGcat > 3:102884/1‑148 (MQ=255) gcgTGTGACGGCTCAGCCCCACCGCAAATGGGAGTTGCCTGATGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCAtt < 5:342878/148‑1 (MQ=255) ttctggagaccacaaccgcgttgcagaggctgtagccaaacaagttggcttagatgaagcgtggggagacctgatgccggaagacaaggtcaaggccatcaaaaacctgcgccttagcgccaaggTGGCCATGGCAGGGGCATCATTGa < 3:168803‑M1/24‑1 (MQ=255) ccccACCGCAAATGGGAGTTGCCTGATGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAggg < 3:156333/124‑1 (MQ=255) ccccACCGCAAATGGGAGTTGCCTGATGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAggg > 4:156333/1‑124 (MQ=255) ccccACCGCAAATGGGAGTTGCCTGATGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCCATTGCGAGACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACccacca > 5:155206/1‑149 (MQ=255) gttgcagaggctgtagccaaacaagttggcttagatgaagcgtggggagacctgatgccggaagacaaggtcaaggccatcaaaaacctgcgccttagcgccaaggTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGc > 6:356434‑M1/107‑149 (MQ=255) ttgcagaggctgtagccaaacaagttggcttagatgaagcgtggggagacctgatgccggaagacaaggtcaaggccatcaaaaacctgcgccttagcgccaaggTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGcc > 4:168803‑M1/106‑149 (MQ=255) gcagaggctgtagccaaacaagttggcttagatgaagcgtggggagacctgatgccggaagacaaggtcaaggccatcaaaaacctgcgccttagcgccaaggTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCa > 5:334512‑M1/104‑148 (MQ=255) aTGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAg < 6:219740/149‑1 (MQ=255) aTGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATAAGATCCAGCAGCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAg > 1:251718/1‑149 (MQ=255) tGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAgg < 4:102884/149‑1 (MQ=255) ccATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGCCCACCTTGGCGCTAAGGCGCAGGTTATTGATg > 3:6467/1‑149 (MQ=255) aGCGCGATATCAGCCGTTTCCAGGGCAACATCAGCTCCAGCAGCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCtt < 5:18166/149‑1 (MQ=255) aGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCtt > 1:109294/1‑149 (MQ=255) gcgATATCTTCCGTTTCCAGGGGAACATCAGATGCAGCAGCCCCCTTTGCGATACGAACGCTGGAAGTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGGTAAGGCGCAGGTTTTTGATGGGCTTGAc < 4:6467/149‑1 (MQ=255) gcgATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGAc > 6:325745/1‑149 (MQ=255) atatCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCCATTGCTATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCtt < 5:325745/149‑1 (MQ=255) tCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTc > 7:186312/1‑149 (MQ=255) aGGGCAACATCAGATCCAGCAGCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCAc < 8:310052/95‑1 (MQ=255) aGGGCAACATCAGATCCAGCAGCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAg > 4:238880/1‑149 (MQ=255) aGGGCAACATCAGATCCAGCAGCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAg < 1:90195/149‑1 (MQ=255) aGGGCAACATCAGATCCAGCAGCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAg < 3:238880/149‑1 (MQ=255) aGGGCAACATCAGATCCAGCAGCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAg > 2:90195/1‑149 (MQ=255) gggCAACATCAGATCCAGCAGCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGtttt < 7:264265/117‑1 (MQ=255) gggCAACATCAGATCCAGCAGCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGtttt > 8:264265/1‑117 (MQ=255) aTCAGATCCAGCAGCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTcccc > 7:126475/1‑149 (MQ=255) aTCAGATCCAGCAGCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTccc > 2:209970/1‑148 (MQ=255) aGATCCAGCAGCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTCCCCACg > 2:87404/1‑149 (MQ=255) cagcagCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTCCCCACGCTTc < 2:108710/148‑1 (MQ=255) gcCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTCCCCACGCTTCATCTaa < 8:186312/149‑1 (MQ=255) cATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTCCCCACGCTTCATCTAAGCCaa > 4:344178/1‑149 (MQ=255) aTTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTCCCCACGCTTCATCTAAGCCAAc < 3:344178/149‑1 (MQ=255) cGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCCTTGACGCCGTAAACCACCATGGCCACCGTGGCCCTTAGGCCGAGGTTTTTGATGGCCTTTACCTTGTCTTCCCGCATCAGGTCTCCCCCCGCGTCATCTAAGCCAACTTGt > 1:217931/1‑149 (MQ=255) aTACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGAACTTGTCTTCCGGCATCAGGTCTCCCCACGCTTCATCTAAGCCAACTTGttt < 1:87404/149‑1 (MQ=255) ccgtctcTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTCCCCACGCTTCATCTAAGCCAACTTGTTTgg < 5:229109/142‑1 (MQ=255) cAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTCCCCACGCTTCATCTAAg > 4:8784/1‑134 (MQ=255) cAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTCCCCACGCTTCATCTAAg < 3:8784/134‑1 (MQ=255) cAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTCCCCACGCTTCATCTAAGCCAACTTGTTTGGc > 2:300896/1‑148 (MQ=255) cTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTCCCCACGCTTCATCTAAGCCAACTTGTTTGGCTACAGc < 2:217931/149‑1 (MQ=255) TGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTCCCCACGCTTCATCTAAGCCAACTTGTTTGGCTACAGCCTCTGc < 7:148902‑M1/148‑1 (MQ=255) | ATTCTGGTGGATGATCGATCGCGTGTGACGGCTCAGCCCCACCGCAAATGGGAGTTGCCTGATGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCCATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTCCCCACGCTTCATCTAAGCCAACTTGTTTGGCTACAGCCTCTGC > NC_002947/43677‑43970 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |