New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	742597 =	NA (NA)	4 (0.080)	4/248	NT	NA	coding (698/1422 nt)	PP_0635	group II intron‑encoding maturase
	?	NC_002947	742657 =	NA (NA)					coding (758/1422 nt)	PP_0635	group II intron‑encoding maturase

CTGGAGAAGTTCTTCGATCGAGTCAACCACGACATCCTGATGGCCTGTATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAGG  >  NC_002947/742470‑742617                                                                                                                                |                     cttgagaAGTTCTTCGATCGAGTCAACCACGACATCCTGATGGCCTGTATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCaggagg  <  3:264483/145‑1 (MQ=1)                                                                                                                                |                     CTGGAGAAGTTCTTCGATCGAGTCAACCACGACATCCTGATGGCCTGTATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAGG  >  NC_002947/742470‑742617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.