New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1083135 =54 (1.020)7 (0.140) 6/238 NT 13.3% coding (2790/3822 nt) PP_0938 hypothetical protein
?NC_002947 1083175 = 41 (0.830)coding (2830/3822 nt) PP_0938 hypothetical protein

GCGGGCGCCTGGAGACCCTGGACCTGGCCCCTTGGCAAGAGCAGGCGGGCCGGCTGGCTGGGGACGACCCCGGTGGCAGCGCGCGGCAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCATGCAGACCTTGCGGCTGCCTGCCGC  >  NC_002947/1082987‑1083278
                                                                                                                                                    |                                                                                                                                               
gcgGGCGCCTGGAGACCCTGGACCTGGCCCCTTGGCAAGAGCAGGCGGGCCGGCTGGCTGGGGACGACCCCGGTGGCAGCGCGCGGCAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAAc                                                                                                                                                 <  6:331918/149‑1 (MQ=255)
cggggCGCCTGGAGACCCTGGACCTGGCCCCTTGGCAAGAGCAGGCGGGCCGGCTGGCTGGGGACGACCCCGGTGGCAGCGCGCGGCAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAAc                                                                                                                                                 <  4:86052/147‑1 (MQ=255)
          ggAGACCCTGGACCTGGCCCCTTGGCAAGAGCAGGCGGGCCGGCTGGCTGGGGACGACCCCGGTGGCAGCGCGCGGCAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTgg                                                                                                                                       >  6:65402/1‑149 (MQ=255)
           gagaCCCTGGACCTGGCCCCTTGGCAAGAGCAGGCGGGCCGGCTGGCTGGGGACGACCCCGGTGGCAGCGCGCGGCAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTg                                                                                                                                        <  2:339814/147‑1 (MQ=255)
                 tcttcagcctgctgttcagcggcgctggcggcaggcagccgcaaggtctgcatgcgcacgaccacgggcgcgcccttggcatccggtacgcgcgcattaccaatgacttccttgctgtcgaggcgcaaatcCCAGGCCGTGGTCCGCCt                                                                                                                                <  2:311235‑M1/18‑1 (MQ=255)
                     aCCTGGCCCCTTGGCAAGAGCAGGCGGGCCGGCTGGCTGGGGACGACCCCGGTGGCAGCGCGCGGCAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGcc                                                                                                                            >  8:296918/1‑149 (MQ=255)
                          gCCCCTTGGCATGAGCAGGCGGGCCGGCTGGCTGGGGACGACCCCGGTGGCAGCGCGCGGCAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGcc                                                                                                                                 <  4:32963/139‑1 (MQ=255)
                          gCCCCTTGGCAAGAGCAGGCGGGCCGGCTGGCTGGGGACGACCCCGGTGGCAGCGCGCGGCAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGcc                                                                                                                                 >  3:32963/1‑139 (MQ=255)
                                      gcgctggcggcaggcagccgcaaggtctgcatgcgcacgaccacgggcgcgcccttggcatccggtacgcgcgcattaccaatgacttccttgctgtcgaggcgcaaatcCCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTg                                                                                                           >  7:109340‑M1/111‑149 (MQ=255)
                                      gagCAGGCGGGCCGGCTGGCTGGGGACGACCCCGGTGGCAGCGCGCGGCAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGTCCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTg                                                                                                           <  4:140087/149‑1 (MQ=255)
                                       cgctggcggcaggcagccgcaaggtctgcatgcgcacgaccacgggcgcgcccttggcatccggtacgcgcgcattaccaatgacttccttgctgtcgagccgcaaatcCCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTgg                                                                                                          >  1:311235‑M1/110‑149 (MQ=255)
                                        gCAGGCGGGCCGGCTGGCTGGGGACGACCCCGGTGGCAGCGCGCGGCAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTggg                                                                                                         <  7:296918/149‑1 (MQ=255)
                                                        gctggGGACGACCCCGGTGGCAGCGCGCGGCAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGCCGGCCCGGCCTGGGATTTGCGCCTCGAc                                                                                           <  1:194055/147‑1 (MQ=255)
                                                         ctggGGACGACCCCGGTGGCAGCGCGCGGCAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGc                                                                                                                                  >  1:121567/1‑107 (MQ=255)
                                                         ctggGGACGACCCCGGTGGCAGCGCGCGGCAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGc                                                                                                                                  <  2:121567/107‑1 (MQ=255)
                                                           ggggACGACCCCGGTGGCAGCGCGCGGCAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCgggg                                                                                                                       >  4:64770/1‑116 (MQ=255)
                                                           ggggACGACCCCGGTGGCAGCGCGCGGCAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCgggg                                                                                                                       <  3:64770/116‑1 (MQ=255)
                                                              gacgacCCCGGTGGCAGCGCGCGGCAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATCGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAgg                                                                                    >  1:109429/1‑148 (MQ=255)
                                                               acgacCCCGGTGGCAGCGCGCGGCAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGaa                                                                                  <  2:109429/149‑1 (MQ=255)
                                                                ctgcatgcgcacgaccacgggcgcgcccttggcatccggtacgcgcgcattaccaatgacttccttgctgtcgaggcgcaaatcCCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTg                                                                                                           >  7:107140‑M1/85‑123 (MQ=255)
                                                                ctgcatgcgcacgaccacgggcgcgcccttggcatccggtacgcgcgcattaccaatgacttccttgctgtcgaggcgcaaatcCCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTg                                                                                                           <  8:107140‑M1/39‑1 (MQ=255)
                                                                 gacCCCGGTGGCAGCGCGCGGCAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGt                                                                                >  7:12066/1‑149 (MQ=255)
                                                                 gacCCCGGTGGCAGCGCGCGGCAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGt                                                                                >  1:61533/1‑149 (MQ=255)
                                                                   ccccGGTGGCAGCGCGCGGCAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCa                                                                              >  3:178783/1‑149 (MQ=255)
                                                                    cccGGTGGCAGCGCGCGGCAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCAt                                                                             >  8:294507/1‑149 (MQ=255)
                                                                    cccGGTGGCAGCGCGCGGCAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCAt                                                                             >  8:176508/1‑149 (MQ=255)
                                                                           gCAGCGCGCGGCAGAACCTGCAAAGCGTCGACCTGAGTATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAAt                                                                      >  1:215478/1‑149 (MQ=255)
                                                                                acgggcgcgcccttggcatccggtacgcgcgcattaccaatgacttccttgctgtcgaggcgcaaatcCCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTggg                                                                                                         <  3:302893‑M1/41‑1 (MQ=255)
                                                                                acgggcgcgcccttggcatccggtacgcgcgcattaccaatgacttccttgctgtcgaggcgcaaatcCCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTggg                                                                                                         >  4:302893‑M1/69‑109 (MQ=255)
                                                                                   cgGCAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGa                                                                                                        >  1:272773/1‑107 (MQ=255)
                                                                                   cgGCAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGa                                                                                                        <  2:272773/107‑1 (MQ=255)
                                                                                      cAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTAcc                                                           <  7:176508/149‑1 (MQ=255)
                                                                                      cAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTAcc                                                           >  1:298751/1‑149 (MQ=255)
                                                                                         aaCCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATgc                                                                    <  7:23197/137‑1 (MQ=255)
                                                                                         aaCCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATgc                                                                    >  8:23197/1‑137 (MQ=255)
                                                                                          aCCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGAt                                                       <  5:65402/149‑1 (MQ=255)
                                                                                           ccTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATg                                                      >  2:249079/1‑149 (MQ=255)
                                                                                            cTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGAt                                                                                                       <  4:127234/99‑1 (MQ=255)
                                                                                            cTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGAt                                                                                                       >  3:127234/1‑99 (MQ=255)
                                                                                              gCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGcc                                                    >  3:37593/1‑148 (MQ=255)
                                                                                                      tCGACCTGAGTATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGgcgcg                                           <  2:215478/149‑1 (MQ=255)
                                                                                                         aCCTGATCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGt                                                                         >  6:141855/1‑116 (MQ=255)
                                                                                                         aCCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGccc                                        >  4:156207/1‑149 (MQ=255)
                                                                                                             gAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTAcc                                                           >  7:332326/1‑126 (MQ=255)
                                                                                                             gAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTAcc                                                           <  8:332326/126‑1 (MQ=255)
                                                                                                             gAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTgg                                    >  1:332968/1‑149 (MQ=255)
                                                                                                                cATCGTCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGcggccc                                                                                                                 <  8:156253/69‑1 (MQ=255)
                                                                                                                cATCGGCCAGTTGAAAGCCTTCGGCATGGCCATGCACCAGGCCGTGGTCCGCCTGGCCCGGGGcggccc                                                                                                                 >  7:156253/1‑69 (MQ=255)
                                                                                                                cATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGcggccc                                                                                                                 >  7:156250/1‑69 (MQ=255)
                                                                                                                cATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGcggccc                                                                                                                 <  8:156250/69‑1 (MQ=255)
                                                                                                                  tCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTg                               <  3:156207/149‑1 (MQ=255)
                                                                                                                    ggCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTgc                              <  2:298751/148‑1 (MQ=255)
                                                                                                                      ccAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCa                           >  7:116618/1‑149 (MQ=255)
                                                                                                                         gTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGccc                                        >  3:238227/1‑133 (MQ=255)
                                                                                                                         gTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGccc                                        <  4:238227/133‑1 (MQ=255)
                                                                                                                            gAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAgg                                                <  6:61253/122‑1 (MQ=255)
                                                                                                                            gAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAgg                                                >  5:61253/1‑122 (MQ=255)
                                                                                                                             aaaGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCATGCAGAc                    >  4:177786/1‑149 (MQ=255)
                                                                                                                                gCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCg                                       >  8:276894/1‑127 (MQ=255)
                                                                                                                                  cTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCATGCAGACCTTGc               <  7:294507/149‑1 (MQ=255)
                                                                                                                                     cGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCATGCAGACCTTGCgg             <  4:178783/148‑1 (MQ=255)
                                                                                                                                        cATCGACCTGAACCAGGCCCTGGTCCGCCTCTCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATCCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCAAGCAGACCTTGCGGctg          >  2:279988/1‑148 (MQ=255)
                                                                                                                                            gACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCATGCAGACCTTGCGGctgcctg      <  3:177786/148‑1 (MQ=255)
                                                                                                                                               cTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGCGGCGCCCGTGGTCGTGCGCATGCAGACCTTGCGGCTGCCTgccgc  <  1:249079/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                               
GCGGGCGCCTGGAGACCCTGGACCTGGCCCCTTGGCAAGAGCAGGCGGGCCGGCTGGCTGGGGACGACCCCGGTGGCAGCGCGCGGCAGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCATGCAGACCTTGCGGCTGCCTGCCGC  >  NC_002947/1082987‑1083278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.