| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1499507 = | 17 (0.320) | 9 (0.190) | 9/230 | NT | 18.9% | intergenic (+84/‑80) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| ? | NC_002947 | = 6060505 | 62 (1.300) | intergenic (+141/+40) | PP_5311/PP_5312 | signal transduction protein/hypothetical protein | |||||
CTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGTT‑TCGGGCACG‑CCGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGGCGCAGGA > NC_002947/1499362‑1499654 | cataaagcataaacacatagcgtgcgggagaaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgccggcgaacacgggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgccc > 6:60623‑M1/148‑149 (MQ=255) attaagcattaacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgcCCg > 7:32761‑M1/147‑149 (MQ=255) ttaagcattaacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgcCCGc < 4:324970‑M1/4‑1 (MQ=255) aagcattaacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgcCCGC‑Tc < 3:250982‑M1/6‑1 (MQ=255) cattaacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgcCCGC‑TCCca > 2:331882‑M1/141‑149 (MQ=255) attaacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgcCCGC‑TCCca < 6:68417‑M1/9‑1 (MQ=255) ttaacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgcCCGC‑TCCcaca > 3:282051‑M1/139‑149 (MQ=255) ttaacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgcCCGC‑TCCca < 7:158689‑M1/9‑1 (MQ=255) ttaacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgcCCGC‑TCCca < 3:137146‑M1/9‑1 (MQ=255) ttaacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgcCCGC‑TCCca < 4:282051‑M1/9‑1 (MQ=255) aacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgcCCGC‑TCCCACAg > 8:312341‑M1/137‑148 (MQ=255) aaCGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGC‑TCCCACAGACTGATTGCCATTAAGCGGGcc > 5:296339/1‑149 (MQ=21) cGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTTCCCACAGACTGATTGCCATTAAGCGGGCCt < 1:37660/149‑1 (MQ=21) cTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTa < 3:227719/149‑1 (MQ=21) accacAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGC‑TCCCACAGACTGATTGCCATTAAGCgg > 5:110916/1‑132 (MQ=18) accacAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGC‑TCCCACAGACTGATTGCCATTAAGCgg < 6:110916/132‑1 (MQ=18) gctggACTGAGGCTGCCAAACGTTGGGAGCTGGCGTCCCCGCGAAACAGGCGCCGCGGTGCATGCCACCGGCTTTGCCGTTTTTCGCGGGCACGCCCGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGccc < 6:112289/146‑1 (MQ=21) aGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttg < 6:296339/148‑1 (MQ=21) aaaCGGTGGGAGCGGGCGTGCCCGCGAAACACGCGCCGCGGTGGATGGCACCCGCGTTGCCGGTGTTAGCGGGCCCGCCCGC‑GCCCACAGACTGAt > 6:332902/1‑96 (MQ=2) ggAGGGGGCGTGCCCGCTAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAAt < 7:120534/149‑1 (MQ=25) gAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATc < 6:73093/149‑1 (MQ=25) ggCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGAc > 3:75176/1‑149 (MQ=25) gCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGAATCCCt > 8:125750/1‑149 (MQ=25) ccgcgaacaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcCCGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttgtt < 2:223430‑M1/64‑1 (MQ=255) ccgcgaacaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcCCGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttgtt > 1:223430‑M1/58‑121 (MQ=255) ccGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt > 1:336119/1‑147 (MQ=37) cgcgAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt > 5:268285/1‑146 (MQ=37) gcgaacaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcCCGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCtt < 4:64381‑M1/91‑1 (MQ=255) gcgaacaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcCCGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCtt > 3:64381‑M1/56‑146 (MQ=255) ccgcGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTACCGAATCATGACTCACTTAGAACTCTATCAAg > 6:210130/1‑148 (MQ=37) ccgcGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGc < 7:125750/149‑1 (MQ=37) ccgcGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGc < 5:210130/149‑1 (MQ=37) cggtgttcgcgggcacgcCCGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACttcttc > 7:188959‑M1/19‑149 (MQ=255) gtgttcgcgggcacgcCCGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCa > 4:75176‑M1/17‑149 (MQ=255) tgttcgcgggcacgcCCGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCAt > 6:169520‑M1/16‑149 (MQ=255) gggcacgcCCGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATc > 7:289092‑M1/9‑88 (MQ=255) gggcacgcCCGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATc < 8:289092‑M1/80‑1 (MQ=255) gcCCGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATAAAGCAGATCTGAAAAGTCCCGACTTCTTCCATgacgcggcgaag < 3:238435‑M1/146‑4 (MQ=255) CCGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGGCGCAGGa < 7:69799‑M1/148‑1 (MQ=255) | CTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGTT‑TCGGGCACG‑CCGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGGCGCAGGA > NC_002947/1499362‑1499654 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |