New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1820949	0 (0.000)	9 (0.180)	4/244	NT	100%	coding (712/1422 nt)	PP_1624	group II intron‑encoding maturase
	?	NC_002947	= 2070369	NA (NA)					coding (743/1422 nt)	PP_1846	group II intron‑encoding maturase

TCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTCTCGCCGTTGCTGTCGAATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACGCAGTCCCCGGGCCG  >  NC_002947/1820807‑1821096                                                                                                                                               |                                                                                                                                                    tCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGACAG‑CAACGGCgagagcg                                                                                                                                              >  7:61351‑M1/1‑142 (MQ=255)           tttttCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCAACGGCgaaagcgggccgcctt                                                                                                                                     >  5:303309‑M1/1‑133 (MQ=255)                                gACATCCTGATGGCCTGTATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCgaaagcgggccgccttgcggcgtcccctcctgccgtg                                                                                                                <  5:364703‑M1/149‑38 (MQ=255)                                  cATCCTCATGGCCTGCATCGAACGTCGGAGCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCgaaagcgggccgccttgcggcggcccctcctgccgtggg                                                                                                              <  2:145222‑M1/149‑40 (MQ=255)                                      cTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCAACGGCgaaagcgggccgccttgcggcgtcccctcctgccgtgggctga                                                                                                          <  6:303309‑M1/149‑44 (MQ=255)                                         aTGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGACAG‑CAACGGCgagagcgggccgccttgcggcgtcccctcctgccgtgggctgacga                                                                                                       <  8:61351‑M1/148‑47 (MQ=255)                                                                    gaCAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCgagagcgggccgccttgcggcgtcccctcctgccgtg                                                                                                                >  5:340438‑M1/1‑76 (MQ=255)                                                                    gaCAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCgagagcgggccgccttgcggcgtcccctcctgccgtg                                                                                                                <  6:340438‑M1/113‑38 (MQ=255)                                                                                 tCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCaggaggggccgccttgcggcgtcccctc                                                                                                                         <  2:234930‑M1/91‑29 (MQ=255)                                                                                                                                           aCGGCgaaagcgggccgccttgcggcgtcccctcctgccgtgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcg     <  3:28559‑M1/149‑145 (MQ=255)                                                                                                                                           aCGGCgaaagcgggccgccttgcggcgtcccctcctgccgtgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcg     <  6:145216‑M1/149‑145 (MQ=255)                                                                                                                                             ggCgaaagcgggcggccttgcggcgtcccgtcctgccgtgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatcctactttcgatgcaggccttgaggatgtcgtg   <  7:89510‑M1/149‑147 (MQ=255)                                                                                                                                              gCgaaagcgggccgccttgcggcgtcccctcctgccgtgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtga  <  1:8136‑M1/149‑148 (MQ=255)                                                                                                                                              gCgaaagcgggccgccttgcggcgtcccctcctgccgtgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtga  <  3:126386‑M1/149‑148 (MQ=255)                                                                                                                                              gCgaaagcgggccgccttgcggcgtcccctcctgccgtgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtga  <  3:290966‑M1/149‑148 (MQ=255)                                                                                                                                              gCgaaagcgggccgccttgcggcgtcccctcctgccgtgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtga  <  3:312593‑M1/149‑148 (MQ=255)                                                                                                                                               |                                                                                                                                                    TCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTCTCGCCGTTGCTGTCGAATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACGCAGTCCCCGGGCCG  >  NC_002947/1820807‑1821096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.