| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1967177 | 16 (0.300) | 4 (0.100) | 4/188 | NT | 27.8% | intergenic (+47/+72) | PP_1762/yciK | hypothetical protein/putative oxidoreductase |
| ? | NC_002947 | = 1967207 | 9 (0.230) | intergenic (+77/+42) | PP_1762/yciK | hypothetical protein/putative oxidoreductase | |||||
GCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC‑GCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCT > NC_002947/1967033‑1967325 | gCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGACAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC‑GCTCCCACAGGATCa > 7:70697/1‑149 (MQ=255) aaGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC‑GCTCCCACAGGATCAcc < 3:188032/149‑1 (MQ=255) aaGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC‑GCTCCCACAGGATCAcc < 4:338711/149‑1 (MQ=255) agagTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC‑GCTCCCACAGGATCACCg < 7:206738/149‑1 (MQ=255) cTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC‑GCTCCCACAGGATCAcc < 4:50123/138‑1 (MQ=255) cTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC‑GCTCCCACAGGATCACCGCAACCCTCaa < 6:184278/149‑1 (MQ=255) tGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC‑GCTCCCACAGGATCACCGCAACCCTCaat < 8:70697/149‑2 (MQ=255) cATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC‑GCTCCCACAGGATCACCGCAACCCTCAAGGa > 1:124242/1‑149 (MQ=255) aTGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC‑GCTCCCACAGGATCACCGCAACCCTCAAGGAt < 2:86681/149‑1 (MQ=255) tcctgttcctgGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC‑GCTCCCACAGGcagggcgcaatccttgagggttgcg > 6:8893‑M1/1‑124 (MQ=255) cctgttcctgGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC‑GCTCCCACAGGATCACCGCAACCCTCAAGGATTgc > 1:311581/1‑147 (MQ=255) cctgttcctgGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC‑GCTCCCACAGGATCACCGCAACCCTCAAGGATTgc < 2:311581/147‑1 (MQ=255) gttcctgGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC‑GCTCCCACAGGATCACCACAACCCTCAAGGATTGCGCcct > 8:198509/1‑149 (MQ=255) gttcatgGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGATGATCGCTTTCCTGTAACGGACTATTCGCGGGCTTGCCC‑GCTCCCACAGGATCACCACAACCATCAAGGATTgctcact > 8:193157/1‑144 (MQ=255) ttcctgGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC‑GCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCcctg < 3:21213/149‑1 (MQ=255) cctgGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC‑GCTCCCACAGGcagggcgcaatccttgagggttgcggtgatc < 5:8893‑M1/148‑32 (MQ=255) aGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCGGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC‑GCTCCCACAGGcagggcgcaatccttgagggttgcggtgatcctgtgg < 4:11599‑M1/149‑38 (MQ=255) gcgcTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGcctgtgg > 1:87535‑M2/1‑142 (MQ=255) cTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC‑GCTCCCACAGGcagggcgcaatccttgagggttgcggtgatcctgtgggagc < 5:141873‑M1/149‑42 (MQ=255) tgcatgcaGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC‑GCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGcctgtg > 2:98416‑M2/1‑137 (MQ=255) tgcatgcaGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC‑GCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGcctgtg < 1:98416‑M2/143‑7 (MQ=255) catgcaGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC‑GCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGcctgtgggagcggg > 2:124242‑M2/1‑135 (MQ=255) catgcaGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC‑GCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGcctgtgggagcg > 1:189311‑M2/1‑135 (MQ=255) atgcaGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC‑GCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGcctgtgggagcgggc > 1:307744‑M2/1‑134 (MQ=255) gcaGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC‑GCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGcctgtgggagcgg < 3:195193‑M2/145‑14 (MQ=255) gcaGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC‑GCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGcctgtgggagcgg > 4:195193‑M2/1‑132 (MQ=255) cgGGCTTGCCC‑GCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCAt < 1:52843/144‑1 (MQ=255) gggCTTGCCC‑GCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAg > 6:198490/1‑90 (MQ=255) gCCC‑GCTCCCACAGGcagggcgcaatccttgagggttgcggtgatcctgtgggagcgggcaagcccgcgaagaggccggtacaggaaagcgatcagcccgcagccaacgccggccgcatacggccttgctggcgcccttccagctgcat > 1:307744‑M1/1‑15 (MQ=255) gCCC‑GCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCGCATcaggtacaggta > 5:249625/1‑149 (MQ=255) ccc‑GCTCCCACAGGcagggcgcaatccttgagggttgcggtgatcctgtgggagcgggcaagcccgcgaagaggccggtacaggaaagcgatcagcccgcagccaacgccggccgcatacggccttgctggcgcccttccagctgcatg > 2:124242‑M1/1‑14 (MQ=255) cc‑GCTCCCACAGGcagggcgcaatccttgagggttgcggtgatcctgtgggagcgggcaagcccgcgaagaggccggtacaggaaagcgatcagcccgcagccaacgccggccgcatacggccttgctggcgcccttccagctgc > 4:195193‑M1/1‑13 (MQ=255) cc‑GCTCCCACAGGcagggcgcaatccttgagggttgcggtgatcctgtgggagcgggcaagcccgcgaagaggccggtacaggaaagcgatcagcccgcagccaacgccggccgcatacggccttgctggcgcccttccagctgc < 3:195193‑M1/145‑133 (MQ=255) c‑GCTCCCACAGGcagggcgcaatccttgagggttgcggtgatcctgtgggagcgggcaagcccgcgaagaggccggtacaggaaagcgatcagcccgcagccaacgccggccgcatacggccttgctggcgcccttccagctgcatg > 1:189311‑M1/1‑12 (MQ=255) gCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGcctgtgggagcgggcaagcccgcgaagaggccggtacaggaaagcgatcagcccgcagccaacgccggccgcatacggccttgctggcgcccttccagctgcatgcag < 5:141873‑M2/149‑109 (MQ=255) ccACAGGcagggcgcaatccttgagggttgcggtgatcctgtgggagcggggcaagcccgcgaagaggccggtacaggaaagcgatcagcccgcagccaacgccggccgcatacggccttgctggcgcccttccagctgcatgcagcgc > 1:87535‑M1/1‑7 (MQ=255) ccACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGcctgtgggagcgggcaagcccgcgaagaggccggtacaggaaagcgatcagcccgccgccaacgccggccgcatacggccttgctggcgcccttccagctgcatgcagcgct < 4:11599‑M2/149‑113 (MQ=255) cacaGGcagggcgcaatccttgagggttgcggtgatcctgtgggagcgggcaagcccgcgaagaggccggtacaggaaagcgatcagcccgcagccaacgccggccgcatacggccttgctggcgcccttccagctgcatgca < 1:98416‑M1/143‑138 (MQ=255) cacaGGcagggcgcaatccttgagggttgcggtgatcctgtgggagcgggcaagcccgcgaagaggccggtacaggaaagcgatcagcccgcagccaacgccggccgcatacggccttgctggcgcccttccagctgcatgca > 2:98416‑M1/1‑6 (MQ=255) ggATCCCCGCAACCCGCAAGCATTCCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGAtc < 6:249625/149‑1 (MQ=255) gATCACCGCAACCCTCAAGGATTGCGCCCTGcctgtgggagcgggcaagcccgcgaagaggccggtacaggaaagcgatcagcccgcagccaacgccggccgcatacggccttgctggcgcccttccagctgcatgcagcgctccagg < 5:8893‑M2/148‑118 (MQ=255) gATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATg > 7:169110/1‑145 (MQ=255) gATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATg < 8:169110/145‑1 (MQ=255) gATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGAtct > 3:132298/1‑149 (MQ=255) | GCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCC‑GCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCT > NC_002947/1967033‑1967325 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |