New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3787557	46 (0.870)	6 (0.120)	5/242	NT	10.7%	coding (1078/1392 nt)	PP_3350	hypothetical protein
	?	NC_002947	3791290 =	56 (1.110)					coding (734/1026 nt)	PP_3353	sulfatase‑modifying protein

GTGTTGGCCAGCATGCTCATGCCGGGCATGTACACGCCGTCTTCCTCACGCTGTTTCCACACTTCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCGGCATCGATGCGCATGGCCAGGCGCGGTTGCCAGGGGTGGGTGAA  >  NC_002947/3787418‑3787701                                                                                                                                            |                                                                                                                                                  gtgtTGGCCAGCATGCTCATGCCGGGCATGTACACGCCGTCTTCCTCACGCTGTTTCCACACTTCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGggt‑ggt                                                                                                                                         >  5:106428/1‑149 (MQ=255)      ggCCAGCATGCTCATGCCGGGCATGTACACGCCGTCTTCCTCACGCTGTTTCCACACTTCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAggc                                                                                                                                    >  7:285228/1‑149 (MQ=255)       gCCAGCATGCTCATGCCGGGCATGTACACGCCGTCTTCCTCACGCTGTTTCCACACTTCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAggc                                                                                                                                    <  7:154300/148‑1 (MQ=255)             aTGCTCATGCCGGGCATGTACACGCCGTCTTCCTCACGCTGTTTCCACACTTCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTtcccggccaacggctttggcc                                                                                                                              >  3:316607‑M1/1‑128 (MQ=255)               gCTCATGCCGGGCATGTACACGCCGTCTTCCTCACGCTGTTTCCACACTTCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGc                                                                                                                           >  2:130724/1‑149 (MQ=255)                cTCATGCCGGGCATGTACACGCCGTCTTCCTCACGCTGTTTCCACACTTCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGc                                                                                                                           <  6:106428/148‑1 (MQ=255)                 tCATGCCGGGCATGTACACGCCGTCTTCCTCACGCTGTTTCCACACTTCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCa                                                                                                                         >  5:42094/1‑149 (MQ=255)                 tCATGCCGGGCATGTACACGCCGTCTTCCTCACGCTGTTTCCACACTTCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCa                                                                                                                         >  6:183702/1‑149 (MQ=255)                   aTGCCGGGCATGTACACGCCGTCTTCCTCACGCTGTTTCCACACTTCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCAt                                                                                                                        <  2:36112/148‑1 (MQ=255)                   aTGCCGGGCATGTACACGCCGTCTTCCTCACGCTGTTTCCACACTTCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATa                                                                                                                       <  4:332107/149‑1 (MQ=255)                      ccGGGCATGTACACGCCGTCTTCCTCACGCTGTTTCCACACTTCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTtcccggccaacggctttggcctgttcgat                                                                                                                      <  4:316607‑M1/148‑30 (MQ=255)                           cATGTACACGCCGTCTTCCTCACGCTGTTTCCACACTTCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCAt                                                                                                               >  5:120671/1‑149 (MQ=255)                                  acGCCGTCTTCCTCACGCTGTTTCCACACTTCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTgg                                                                                                        <  5:183702/149‑1 (MQ=255)                                    gCCGTCTTCCTCACGCTGTTTCCACACTTCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTtcccggccaacggctttggcctgttcgatgccg                                                                                                                  >  4:90489‑M1/1‑105 (MQ=255)                                    gCCGTCTTCCTCACGCTGTTTCCACACTTCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGc                                                                                                                           >  5:89692/1‑128 (MQ=255)                                    gCCGTCTTCCTCACGCTGTTTCCACACTTCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGc                                                                                                                           <  6:89692/128‑1 (MQ=255)                                     ccGTCTTCCTCACGCTGTTTCCACACTTCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGt                                                                                                      >  4:107185/1‑148 (MQ=255)                                       gTCTTCCTCACGCTGTTTCCACACTTCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTtcccggccaacggctttggcctgttcgatgccggcggcaatgtctgg                                                                                                    <  2:90488‑M1/149‑48 (MQ=255)                                            ccTCACGCTGTTTCCACACTTCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCg                                                                                                <  6:120671/147‑1 (MQ=255)                                              tCACGCTGTTTCCACACTTCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTtcccggccaacggctttggcctgttcgatgccggcggcaatgtctgg                                                                                                    >  2:340502‑M1/1‑95 (MQ=255)                                              tCACGCTGTTTCCACACTTCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTtcccggccaacggctttggcctgttcgatgccggcggcaatgtctgg                                                                                                    <  1:340502‑M1/142‑48 (MQ=255)                                                    tGTTTCCACACTTCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGt                                                                                      <  6:42094/149‑1 (MQ=255)                                                      tttCCACACTTCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGc                                                                                    <  3:107185/149‑1 (MQ=255)                                                            cacTTCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACtt                                                                              >  2:318849/1‑149 (MQ=255)                                                               ttCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTc                                                                           >  8:76613/1‑149 (MQ=255)                                                                 cGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTc                                                                           <  1:130724/147‑1 (MQ=255)                                                                                            tGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCg                                              <  8:285228/149‑1 (MQ=255)                                                                                               gcCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCGGCa                                           >  4:320449/1‑149 (MQ=255)                                                                                               gcCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCAAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCGGCa                                           >  1:242633/1‑149 (MQ=255)                                                                                                       gagaAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCGGCATCGATgcg                                   >  5:71707/1‑149 (MQ=255)                                                                                                           aGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCGGCATCGATGCGCATg                               <  7:76613/149‑1 (MQ=255)                                                                                                            gCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCGGCATCGATGCGCATgg                              >  1:331040/1‑149 (MQ=255)                                                                                                              cGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCGGCATCGATGCGCATGGcc                            <  2:331040/149‑1 (MQ=255)                                                                                                              cGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCGGCATCGATGCGCATGGc                             >  3:102398/1‑148 (MQ=255)                                                                                                               gAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAg                                                                                                  >  8:28522/1‑78 (MQ=255)                                                                                                               gAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAg                                                                                                  <  7:28522/78‑1 (MQ=255)                                                                                                               gAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCGGCATCGATGCGCATGGc                             >  5:98580/1‑147 (MQ=255)                                                                                                                   gTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCGGCATCGATGCGCATGGCCAGgcg                       <  4:102398/149‑1 (MQ=255)                                                                                                                    tCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCGGCATCGATGCGCATGGCCAGgcgc                      <  1:318849/149‑1 (MQ=255)                                                                                                                      ggCCCCACCACGATGATGTTGCTCAGGGTGGGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCGGCATCGATGCGCATGGCCAGGcgcg                     >  1:31699/1‑149 (MQ=255)                                                                                                                         cccACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCGGCATCGAt                                      <  4:265633/128‑1 (MQ=255)                                                                                                                         cccACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCGGCATCGAt                                      >  3:265633/1‑128 (MQ=255)                                                                                                                         cccACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCGGCATCGATGCGCATGGCCAGGCGCGGTTg                 >  2:256558/1‑149 (MQ=255)                                                                                                                          ccaccaCGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCg                                              <  6:125637/119‑1 (MQ=255)                                                                                                                          ccaccaCGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCg                                              >  5:125637/1‑119 (MQ=255)                                                                                                                           caccacGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCGGCATCGATGCGCATGGCCAGGCGCGGTTGc                >  7:50563/1‑148 (MQ=255)                                                                                                                           caccacGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCGGCATCGATGCGCATGGCCAGGCGCGGTTGc                >  4:160/1‑148 (MQ=255)                                                                                                                             ccacGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCGGCATCGATGCGCATGGCCAGGCGCGGTTGCCAg             <  2:31699/149‑1 (MQ=255)                                                                                                                                cGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCGGCATCGATGCGCATGGCCAGGCGCGGTTGCCAgggg          <  3:160/149‑1 (MQ=255)                                                                                                                                   tgatgTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCAAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCGGCATCGATGCGCATGGCCAGGCGCGGTTGCCAGgggtgg       <  2:242633/149‑1 (MQ=255)                                                                                                                                      tgTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCGGCATCGATGCGCATGGCCAGGCGCGGTTGCCAGgggtgggt     <  6:98580/148‑1 (MQ=255)                                                                                                                                       gTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCGGCATCGATGCGCATGGCCAGGCGCGGTTGCCAGGggtgggtg    >  2:19558/1‑148 (MQ=255)                                                                                                                                        ttGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCGGCATCGATGCGCATGGCCAGGCGCGGTTGCCAGGGGTGggtga   <  8:50563/148‑1 (MQ=255)                                                                                                                                          gCTtcccggccaacggctttggccgggtcgatgccggcggcaatgtctgggagctgactcgcacgggctatcggccaggccatgacgcacagcgcgacgccaagctcgacccctcaggcccggccctgagtgacagcttcgacccggc  <  8:154991‑M1/148‑146 (MQ=255)                                                                                                                                            |                                                                                                                                                  GTGTTGGCCAGCATGCTCATGCCGGGCATGTACACGCCGTCTTCCTCACGCTGTTTCCACACTTCGAAGATGCCGGGCTCGATGCGCAGCGTGCGCCAGGGCGAGAAGCCGAAGGTCGGCCCCACCACGATGATGTTGCTCAGGGT‑GGTGAGGCTGGCTTCGCCATAGACACCATTGCGTGGGTAAAGCGGGTCGAAGGTGCCGACTTTTCCGTCGCCCAGGTCACTGTCGCCGCTTGCGGCATCGATGCGCATGGCCAGGCGCGGTTGCCAGGGGTGGGTGAA  >  NC_002947/3787418‑3787701

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.