New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4586034 =	18 (0.340)	6 (0.140)	6/210	NT	33.5%	intergenic (+117/+98)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	4586105 =	9 (0.210)					intergenic (+188/+27)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase

CGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTCTGC‑GGTAAACCCGCTCCTACCAGGGA‑C‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCA  >  NC_002947/4585889‑4586178                                                                                                                                                   |                                                                                                                                                   aggtgccgcggtatatacgttttgtcgacgagtacccgatgaccgtgaccggcaaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcggg                                                                                                                                                   <  2:182747‑M1/2‑1 (MQ=255)          aGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCt                                                                                                                                         <  7:68813/149‑1 (MQ=255)            tatatacgttttgtcgacgagtacccgatgaccgtgaccggcaaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGGTAAACCCGCTcc                                                                                                                                       <  8:281421‑M1/14‑1 (MQ=255)             cACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTcc                                                                                                                                       >  7:203565/1‑148 (MQ=255)               atacgttttgtcgacgagtacccgatgaccgtgaccggcaaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGGTAAACCCGCTCCTAc                                                                                                                                    <  4:264989‑M1/17‑1 (MQ=255)                   gttttgtcgacgagtacccgatgaccgtgaccggcaaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGGTAAACCCGCTCCTACCAgg                                                                                                                                <  5:280503‑M1/21‑1 (MQ=255)                     aaGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGa                                                                                                                              >  2:79953/1‑149 (MQ=255)                             aGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACC‑GTGCCg                                                                                                                     <  1:79953/149‑1 (MQ=39)                                    ccgatgaccgtgaccggcaaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGGTAAAcc                                                                                                                                             >  1:88656‑M1/112‑119 (MQ=255)                                    ccgatgaccgtgaccggcaaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGGTAAAcc                                                                                                                                             <  2:88656‑M1/8‑1 (MQ=255)                                      cACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAAt                                                                                                            <  8:203565/149‑1 (MQ=39)                                            cgtgaccggcaaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGGTAAACCCGCTCCTACCAGGGA‑CCGTGCCGGCCTTGAATgcggcg                                                                                                      <  7:90390‑M1/46‑1 (MQ=255)                                                     caaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGGTAAACCCGCTCCTACCAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTg                                                                                             >  8:90390‑M1/95‑149 (MQ=255)                                                      aaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGGTAAACCCGCTCCTACCAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTgg                                                                                            >  2:728‑M1/94‑149 (MQ=255)                                                      aCAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTgg                                                                                            >  6:254574/1‑149 (MQ=39)                                                        aGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCa                                                                                                                                  <  5:224083/110‑1 (MQ=38)                                                        aGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCa                                                                                                                                  >  6:224083/1‑110 (MQ=38)                                                        aGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAggg                                                                                                                               >  4:57905/1‑113 (MQ=38)                                                        aGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAggg                                                                                                                               <  3:57905/113‑1 (MQ=38)                                                         gtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGGTAAACCCGCTCCTACCAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAg                                                                                         >  1:182747‑M1/91‑149 (MQ=255)                                                           tGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGc                                                                                                  >  1:332788/1‑138 (MQ=38)                                                           tGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGc                                                                                                  <  2:332788/138‑1 (MQ=38)                                                             aTCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTg                                                                                             <  2:50896/141‑1 (MQ=38)                                                             aTCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTg                                                                                             >  1:50896/1‑141 (MQ=38)                                                                     tgctCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTAc                                                                             <  5:254574/149‑1 (MQ=38)                                                                               aaaGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTg                                                                                                   >  6:112681/1‑117 (MQ=37)                                                                               aaaGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTg                                                                                                   <  5:112681/117‑1 (MQ=37)                                                                                    ttGAGGATGACCGGGTGCTTGGCAAGGTGAAGGTCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAAt                                                                                                            <  8:65538/103‑1 (MQ=25)                                                                                                 ttgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGGTAAACCCGCTCCTACCAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCgg                                                                                   >  4:235492‑M1/51‑115 (MQ=255)                                                                                                 ttgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGGTAAACCCGCTCCTACCAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCgg                                                                                   <  3:235492‑M1/65‑1 (MQ=255)                                                                                                                                                  gGGTAAACCCGCTCCTACCAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCa  <  5:285357‑M1/146‑1 (MQ=255)                                                                                                                                                  gGGTAAACCCGCTCCTACCAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCa  >  6:285357‑M1/2‑147 (MQ=255)                                                                                                                                                   |                                                                                                                                                   CGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTCTGC‑GGTAAACCCGCTCCTACCAGGGA‑C‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCA  >  NC_002947/4585889‑4586178

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.