New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4591353 = | 52 (0.980) | 3 (0.060) | 3/244 | NT | 5.6% | coding (424/816 nt) | liuC | methylglutaconyl‑CoA hydratase |
? | NC_002947 | 4591395 = | 51 (1.010) | coding (466/816 nt) | liuC | methylglutaconyl‑CoA hydratase |
GCTGATGTACGCCCTGCATCGCCTCAAGGCCCCGACCCTGGCCGTGGTGCAAGGTGCAGCCTTTGGCGGCGCGCTGGGCCTGATCAGCTGCTGCGACATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTGGCGTGCGCGCACGCGAGCTGGGCCTGCTGGCCGAGGTGTACCC > NC_002947/4591205‑4591489 | gCTGATGTACGCCCTGCATCGCCTCAAGGCCCCGACCCTGGCCGTGGTGCAAGGTGCAGCCTTTGGCGGCGCGCTGGGCCTGATCAGCTGCTGCGACATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCg > 7:268829/1‑149 (MQ=255) gCTGATGTACGCCCTGCATCGCCTCAAGGCCCCGACCCTGGCCGTGGTGCAAGGTGCAGCCTTTGGCGGCGCGCTGGGCCTGATCAGCTGCTGCGACATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCg < 3:200875/149‑1 (MQ=255) aTGTACGCCCTGCATCGCCTCAAGGCCCCGACCCTGGCCGTGGTGCAAGGTGCAGCCTTTGGCGGCGCGCTGGGCCTGATCAGCTGCTGCGACATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCt < 5:86690/149‑1 (MQ=255) cagcaggttgcttacccaggcttcgacgtggtcgtccagttcgctggccgggtacacctcggccagcaggcccagctcgcgtgcgcgcacgccagtgaaacgctcggcggtgagggcgtagcggcgcgcggcgcgttcgccaatggcct < 4:11364‑M1/5‑1 (MQ=255) tACGCCCTGCATCGCCTCAAGGCCCCGACCCTGGCCGTGGTGCAAGGTGCAGCCTTTGGCGGCGCGCTGGGCCTGATCAGCTGCTGCGACATGGCCATCGGC‑CCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTgg < 1:245855/148‑1 (MQ=255) cccTGCATCGCCTCAAGGCCCCGACCCTGGCCGTGGTGCAAGGTGCAGCCTTTGGCGGCGCGCTGGGCCTGATCAGCTGCTGCGACATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCcg < 8:268829/149‑1 (MQ=255) ccTGCATCGCCTCAAGGCCCCGACCCTGGCCGTGGTGCAAGGTGCAGCCTTTGGCGGCGCGCTGGGCCTGATCAGCTGCTGCGACATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCcgg > 1:321076/1‑149 (MQ=255) ccTGCATCGCCTCAAGGCCCCGACCCTGGCCGTGGTGCAAGGTGCAGCCTTTGGCGGCGCGCTGGGCCTGATCAGCTGCTGCGACATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCcgg > 6:53263/1‑149 (MQ=255) cTCAAGGCCCCGACCCTGGGCGTGGTGCAAGGTGCAGCCTTTGGCGGCGCGCTGGGCCTGATCAGCTGCTGCGACATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGtcatca < 5:232170/148‑1 (MQ=255) aaGGCCCCGACCCTGGCCGTGGTGCAAGGTGCAGCCTTTGGCGGCGCGCTGGGCCTGATCAGCTGCTGCGACATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGcc < 2:21541/148‑1 (MQ=255) aaGGCCCCGACCCTGGCCGTGGTGCAAGGTGCAGCCTTTGGCGGCGCGCTGGGCCTGATCAGCTGCTGCGACATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGc < 6:10049/147‑1 (MQ=255) aaGGCCCCGACCCTGGCCGTGGTGCAAGGTGCAGCCTTTGGCGGCGCGCTGGGCCTGATCAGCTGCTGCGACATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGCCCTGGCCCCGGCGGtcatca > 6:232170/1‑145 (MQ=255) ggCCCCGACCCTGGCCGTGGTGCAAGGTGCAGCCTTTGGCGGCGCGCTGGGCCTGATCAGCTGCTGCGACATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGt < 2:321076/149‑1 (MQ=255) ccGACCCTGGCCGTGGTGCAAGGTGCAGCCTTTGGCGGCGCGCTGGGCCTGATCAGCTGCTGCGACATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGccc < 2:59506/143‑1 (MQ=255) ccGACCCTGGCCGTGGTGCAAGGTGCAGCCTTTGGCGGCGCGCTGGGCCTGATCAGCTGCTGCGACATGGCCATCGGC‑GCCGAAGACGCCAAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGccc > 1:59506/1‑143 (MQ=255) gCCGTGGTGCAAGGTGCAGCCTTTGGCGGCGCGCTGGGCCTGATCAGCTGCTGCGACATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAg < 5:53263/147‑1 (MQ=255) ggtgCAAGGTGCAGCCTTTGGCGGCGCGCTGGGCCTGATCAGCTGCTGCGACATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGtcatc < 8:278688/124‑1 (MQ=255) ggtgCAAGGTGCAGCCTTTGGCGGCGCGCTGGGCCTGATCAGCTGCTGCGACATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGtcatc > 7:278688/1‑124 (MQ=255) cgctggccgggtacacctcggccagcaggcccagctcgcgtgcgcgcacgccagtgaaacgctcggcggtgagggcgtagcggcgcgcggcgcgttcgccaatGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCAtt > 7:262963‑M1/104‑148 (MQ=255) gCAAGGTGCAGCCTTTGGCGGCGCGCTGGGCCTGATCAGCTGCTGCGACATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGccc < 2:269449/126‑1 (MQ=255) gCAAGGTGCAGCCTTTGGCGGCGCGCTGGGCCTGATCAGCTGCTGCGACATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGccc > 1:269449/1‑126 (MQ=255) gCAAGGTGCAGCCTTTGGCGGCGCGCTGGGCCTGATCAGCTGCTGCGACATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGc > 5:171757/1‑148 (MQ=255) tggccgggtacacctcggccagcaggcccagctcgcgtgcgcgcacgccagtgaaacgctcggcggtgagggcgtagcggcgcgcggcgcgttcgccaatGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTg > 6:78229‑M1/101‑146 (MQ=255) tggccgggtacacctcggccagcaggcccagctcgcgtgcgcgcacgccagtgaaacgctcggcggtgagggcgtagcggcgcgcggcgcgttcgccaatGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTg < 5:78229‑M1/46‑1 (MQ=255) gcggcgCGCTGGGCCTGATCAGCTGCTGCGACATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACgcgccgcgcgccgc > 7:125487/1‑149 (MQ=255) gcTGGGCCTGATCAGCTGCTGCGACATGGCCATCGTCGGCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCAACAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGcc > 1:238353/1‑149 (MQ=255) tgcGACATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCAc > 1:125509/1‑149 (MQ=255) cGACATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTg < 2:125509/149‑1 (MQ=255) cGACATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTg < 8:125487/149‑1 (MQ=255) gACATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTgg > 8:48747/1‑149 (MQ=255) gACATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTgg > 2:178723/1‑149 (MQ=255) aCATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTGGc > 3:11364/1‑149 (MQ=255) gCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTAGGAAGTACGCATCGTCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCTCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTGGCGTgc < 2:238353/148‑1 (MQ=255) gcCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTGGCGTGCGCGCACGCGa < 1:178723/149‑1 (MQ=255) gAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGa < 4:165415/119‑1 (MQ=255) gAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTGGCGTGCGCGCACGCGAGc > 5:39657/1‑148 (MQ=255) gAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTGGCGTGCGCGCACGCGAGc < 6:39657/148‑1 (MQ=255) gAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCCAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGa > 3:165415/1‑119 (MQ=255) aCGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTGGCGTGCGCGCACGCGAGCTGGGc < 6:171757/149‑1 (MQ=255) gCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTGGCg < 4:24619/127‑1 (MQ=255) gCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTGGCg > 3:24619/1‑127 (MQ=255) gCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTGGCGTgcgc > 4:74540/1‑132 (MQ=255) gCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTGGCGTgcgc < 3:74540/132‑1 (MQ=255) gCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTGGCGTGCGCGCACGCGAGCTgg > 1:37319/1‑145 (MQ=255) gCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTGGCGTGCGCGCACGCGAGCTgg < 2:37319/145‑1 (MQ=255) gCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTGGCGTGCGCGCACGCGAGCTGGGCct > 7:69335/1‑149 (MQ=255) ccAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTGGCGTGCGCGCACGCGAGCTCGGccag > 4:183419/1‑146 (MQ=255) cAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCAcc < 8:67427/105‑1 (MQ=255) cAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCAcc > 7:67427/1‑105 (MQ=255) aaCTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTGGCGTGCGCGCACGCGAGCTGGGCctgctg > 7:198924/1‑149 (MQ=255) aCTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTGGCGTGCGCGCACGCGAGCTGGGCCTGCTgg > 3:220159/1‑149 (MQ=255) tgCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTGGCGTGCGCGCACGCGAGCTCGGCCAGCAGGcc < 3:183419/147‑1 (MQ=255) ccTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTGGCGTGCGCGCACGCGAGCTGGGCCTGCTGGCCGAgg > 5:190320/1‑149 (MQ=255) ccTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTGGCGTGCGCGCACGCGAGCTGGGCCTGCTGGCCGAg < 5:78835/148‑1 (MQ=255) ccTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTGGCGTGCGCGCACGCGAGCTGGGCCTGCTGGCCGAg < 8:69335/148‑1 (MQ=255) cTGTCGGAAGTACGCTTCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGTCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTGGCGTGCGCGCAc < 4:138064/124‑1 (MQ=255) cTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTGGCGTGCGCGCACGCGAGCTGGGCCTGCTGGCCgggta < 8:198924/149‑5 (MQ=255) ggAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTGGCGTGCGCGCACGCGAGCTGGGCCTGCTGGCCGAGGTGTAcc < 4:220159/149‑1 (MQ=255) gAAGTAAGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTAAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTAACCGCCGAGCGTTACACTGGCGTGCGCGCACGCGAGCTGGCCCTGCAGCCCGAGGTGTAccc > 8:172858/1‑149 (MQ=255) gCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTg < 5:48955/99‑1 (MQ=255) gCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTg > 6:48955/1‑99 (MQ=255) | GCTGATGTACGCCCTGCATCGCCTCAAGGCCCCGACCCTGGCCGTGGTGCAAGGTGCAGCCTTTGGCGGCGCGCTGGGCCTGATCAGCTGCTGCGACATGGCCATCGGC‑GCCGAAGACGCCCAACTGTGCCTGTCGGAAGTACGCATCGGCCTGGCCCCGGCGGTCATCAGCCCGTTCGTGGTCAAGGCCATTGGCGAACGCGCCGCGCGCCGCTACGCCCTCACCGCCGAGCGTTTCACTGGCGTGCGCGCACGCGAGCTGGGCCTGCTGGCCGAGGTGTACCC > NC_002947/4591205‑4591489 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |