New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 929449	54 (1.020)	3 (0.060)	3/240	NT	5.5%	coding (16173/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	= 929502	52 (1.040)					coding (16120/18933 nt)	PP_0806	surface adhesion protein

TGGCGAGGTCAAGGTAATGCTGAAGGTGCCGTTGGCTTGTACCACACCGGTACCCACCTGGCCGTTCGGGCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGGACACATTGCCTGCAGTGTCAGCCTGGCTCACGCCCAGTACCTGGCCGTTGAGCTGCGCGGCGTTCAGGTTGACGGTGAACACGCCACCGCCA  >  NC_002947/929356‑929644                                                                                                                                                   |                                                                                                                                               tgGCGAGGTCAAGGTAATGCTGAAGGTGCCGTTGGCTTGTACCACACCGGTACCCACCTGGCCGTTCGGGCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTg                                                                                                                                               >  5:187250‑M2/1‑147 (MQ=255)               tAATGCTGAAGGTGCCGTTGGCTTGTACCACACCGGTACCCACCTGGCCGTTCGGGCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGc                                                                                                                                >  3:77000/1‑149 (MQ=255)                  tGCTGAAGGTGCCGTTGGCTTGTACCACACCGGTACCCACCTGGCCGTTCGGGCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGc                                                                                                                             <  2:244118/149‑1 (MQ=255)                   gCTGAAGGTGCCGTTGGCTTGTACCACACCGGTACCCACCTGGCCGTTCGGGCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTg                                                                                                                              >  8:158333/1‑147 (MQ=255)                     tGAAGGTGCCGTTGGCTTGTACCACACCGGTACCCACCTGGCCGTTCGGGCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAgg                                                                                                                          >  7:150820/1‑149 (MQ=255)                     tGAAGGTGCCGTTGGCTTGTACCACACCGGTACCCACCTGGCCGTTCGGGCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAgg                                                                                                                          >  5:182024/1‑149 (MQ=255)                      gAAGGTGCCGTTGGCTTGTACCACACCGGTACCCACCTGGCCGTTCGGGCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGt                                                                                                                         >  2:317883/1‑149 (MQ=255)                             ccGTTGGCTTGTACCACACCGGTACCCACCTGGCCGTTCGGGCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTgcggc                                                                                                                  <  8:150820/149‑1 (MQ=255)                             ccGTTGGCTTGTACCACACCGGTACCCACCTGGCCGTTCGGGCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTgc                                                                                                                     >  6:166405/1‑146 (MQ=255)                             ccGTTGGCTTGTACCACACCGGTACCCACCTGGCCGTTCGGGCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTgc                                                                                                                     <  5:166405/146‑1 (MQ=255)                                  ggCTTGTACCACACCGGTACCCACCTGGCCGTTCGGGCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGgtg                                                                                                              <  4:77000/148‑1 (MQ=255)                                     ttGTACCACACCGGTACCCACCTGGCCGTTCGGGCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGc                                                                                                          >  2:76494/1‑149 (MQ=255)                                         aCCACACCGGTACCCACCTGGCCGTTCGGGCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGgtgt                                                                                                             >  6:299708/1‑142 (MQ=255)                                         aCCACACCGGTACCCACCTGGCCGTTCGGGCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGgtgt                                                                                                             <  5:299708/142‑1 (MQ=255)                                         aCCACACCGGTACCCACCTGGCCGTTCGGGCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGgt                                                                                                               <  2:174381/140‑1 (MQ=255)                                         aCCACACCGGTACCCACCTGGCCGTTCGGGCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGgt                                                                                                               >  1:174381/1‑140 (MQ=255)                                           cacaCCGGTACCCACCTGGCCGTTCGGGCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGtgc                                                                                                    >  3:206099/1‑149 (MQ=255)                                           cacaCCGGTACCCACCTGGCCGTTCGGGCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGtgc                                                                                                    >  8:128739/1‑149 (MQ=255)                                            acacCGGTAACCACCTCGCCGTTCGGCCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCCGAAAGCACGGTAACGGAGACGGAGATGGCGACGTTGGTGGGCTCTCAACGTGGCTGCAGGTCATCCTCGCTGTAGCTtttg                                                                                                     >  8:289814/1‑147 (MQ=255)                                                      ccACCTGGCCGTTCGGGCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGGAcaca                                                                                         <  7:158333/149‑1 (MQ=255)                                                               cGTTCGGGCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGgt                                                                                                               <  7:300377/118‑1 (MQ=255)                                                               cGTTCGGGCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGgt                                                                                                               >  8:300377/1‑118 (MQ=255)                                                               cGTTCGGGCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGGACACATTGCCTGCa                                                                                <  1:317883/149‑1 (MQ=255)                                                                    gggCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGGACACACTGCAGGCAatgt                                                                            <  6:182024/148‑1 (MQ=255)                                                                     ggCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGGACACATTGCCTGCa                                                                                <  2:280644/143‑1 (MQ=255)                                                                     ggCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGGACACATTGCCTGCa                                                                                >  1:280644/1‑143 (MQ=255)                                                                      gCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGGACACATTGCCTGCAgt                                                                              >  7:302538/1‑144 (MQ=255)                                                                      gCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGGACACATTGCCTGCAgt                                                                              <  8:302538/144‑1 (MQ=255)                                                                             aCGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTgggcgctaccattaccgtccaaggcccgaacggccaggtgggtaccggtgtggtacaagccaacggcaccttcagc                                                                    >  3:278054‑M2/1‑71 (MQ=255)                                                                             aCGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTgggcgctaccattaccgtccaaggcccgaacggccaggtgggtaccggtgtggtacaagccaacggcaccttcagc                                                                    <  4:278054‑M2/147‑77 (MQ=255)                                                                                 tAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGGACACATTGCCTGCAGTGTCAGCCTGGCTCACg                                                              <  5:19643/149‑1 (MQ=255)                                                                                 tAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCACGTCTGCGGCGGTGTAGCTTGTGCTGCCGGACACATTGCCTGCAGTGTCAGCCTGGCTCAc                                                               >  6:19643/1‑148 (MQ=255)                                                                                     ggTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCtt                                                                                                        >  1:70212/1‑103 (MQ=255)                                                                                     ggTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCtt                                                                                                        <  2:70212/103‑1 (MQ=255)                                                                                      gTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGGACACATTGCCTGCAGTGTCAGCCTGGCTCACGCCCAg                                                         <  7:128739/149‑1 (MQ=255)                                                                                         gcgcCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGGACACATTGCCTGCAGTGTCAGCCTGGCTCACGCCCAGTAc                                                      >  8:41340/1‑149 (MQ=255)                                                                                           gcccgccTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTgggcgctaccattaacgtcctaggcccgaacggccaggtgggtaccggggtggtacaagcccacggcaccttcagcattaccttgacctcgc                                                    <  7:221375‑M2/149‑93 (MQ=255)                                                                                               gccTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGGACACATTGCCTGCAGTGTCAGCCTGGCTCACGCCCAGTACCTGGcc                                                <  1:76494/149‑1 (MQ=255)                                                                                                  tCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGcc                                                                                                >  1:6984/1‑98 (MQ=255)                                                                                                  tCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGcc                                                                                                <  2:6984/98‑1 (MQ=255)                                                                                                  tCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGGACACATTGCCTGCAGTGTCAGCCTGGCTCACGCCCAGTACCTGGCCGtt                                             >  6:12481/1‑149 (MQ=255)                                                                                                    aCCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGGACACATTGCCTGCAGTGTCAGCCTGGCTCACGCCCAGTACCTGGCCGtt                                             <  5:12481/147‑1 (MQ=255)                                                                                                              tgcttaccGGTAGCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGGACACATTGCCTGCAGTGTCAGCCTGGCTCACGCCCAGTACCTGGCCGTTGAGCTGCgcggc                                 <  4:136500/142‑1 (MQ=255)                                                                                                              gTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGGACACATTGCCt                                                                                   >  8:31670/1‑99 (MQ=255)                                                                                                              gTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGGACACATTGCCt                                                                                   <  7:31670/99‑1 (MQ=255)                                                                                                              gTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGGACACATTGCCTGCAGTGTCAGCCTGGCTCACGCCCAGTACCTGGCCGTTGAGCTGCgcggc                                 >  4:216833/1‑149 (MQ=255)                                                                                                                cttaccGGTAGCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGGTCACATTGCCTGCAGTGTCAGCCTGGCTCACGCCCAGTACCTGGCCGTTGAGCTGCgcggcg                                <  3:317068/143‑1 (MQ=255)                                                                                                                        tACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTTCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGGACACATTGCCTGCAGTGTCAGCCTg                                                                     >  6:39604/1‑103 (MQ=255)                                                                                                                        tACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTTCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGGACACATTGCCTGCAGTGTCAGCCTg                                                                     <  5:39604/103‑1 (MQ=255)                                                                                                                          ccGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGGACACATTGCCTGCAGTGTCAGCCTGGCTCACGCCCAGTACCTGGCCGTTGAGCTGCGCGGCGTTCAGGTTGa                      <  7:41340/148‑1 (MQ=255)                                                                                                                          ccGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGGACACATTGCCTGCAGTGTCAGCCTGGCTCACGCCCAGTACCTGGCCGTTGAGCTGCGCGGCGTTCAGGTTGa                      <  4:206099/148‑1 (MQ=255)                                                                                                                                ccGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCCGCCGGACACATTGCCTGCAGTGTCAGCCTGGCTCACGCCCAGTACCTGGCCGTTGAGCTGCGCGGCGTTCAGGTTGACGGTGaa               >  7:267153/1‑149 (MQ=255)                                                                                                                                ccGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCCGCCGGACACATTGCCTGCAGTGTCAGCCTGGCTCACGCCCAGTACCTGGCCGTTGAGCTGCGCGGCGTTCAGGTTGACGGTGaa               <  8:267153/149‑1 (MQ=255)                                                                                                                                   ttGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGGACACATTGCCTGCAGTGTCAGCCTGGCTCACGCCCAGTACCTGGCCGTTGAGCTGCGCGGCGTTCAGGTTGACGGTGAacac            <  1:340689/149‑1 (MQ=255)                                                                                                                                   ttGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGGACACATTGCCTGCAGTGTCAGCCTGGCTCACGCCCAGTACCTGGCCGTTGAGCTGCGCGGCGTTCAGGTTGACGGTGAacac            >  1:323880/1‑149 (MQ=255)                                                                                                                                              gTTGGTGGGCGCTGCATGTGTCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGTACACATTCCCTGCAGTGTCAGGCGGGCTCACGCCCAGTACCTGGCCGTTTATCTGCGCGGCGTTCAGGTTGACGGTGAACACGCCACCGcct  <  7:289814/148‑2 (MQ=255)                                                                                                                                                   |                                                                                                                                               TGGCGAGGTCAAGGTAATGCTGAAGGTGCCGTTGGCTTGTACCACACCGGTACCCACCTGGCCGTTCGGGCCTTGGACGGTAATGGTAGCGCCCGCCTCACCGCTACCGGTAAGCACGGTACCGGTGCCGTTGATGGCGACGTTGGTGGGCGCTGCAGGTGGCTGCAGGTCTGCGGCGGTGTAGCTTGTGCTGCCGGACACATTGCCTGCAGTGTCAGCCTGGCTCACGCCCAGTACCTGGCCGTTGAGCTGCGCGGCGTTCAGGTTGACGGTGAACACGCCACCGCCA  >  NC_002947/929356‑929644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.