New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1216282	39 (0.740)	4 (0.080)	4/234	NT	9.0%	coding (677/4305 nt)	PP_1061	ATP‑dependent DNA helicase
	?	NC_002947	= 1216314	45 (0.930)					coding (645/4305 nt)	PP_1061	ATP‑dependent DNA helicase

CCCAGACATCAATGGCCATCACCGCCCCCAGCGGTACCGGCGGCACTTCGATGGCCAGGTCACGCTTGCGGGCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGGCGCCACGCTTGTTACCGGCCAAGGCATGGATTTCGTCGACGATTACCGTGTGCACATGGG  >  NC_002947/1216169‑1216453                                                                                                                                                  |                                                                                                                                             tccaGACATCAATGGCCATCACCGCCCCCAGCGGTACCGGCGGCACTTCGATGGCCAGGTCACGCTTGCGGGCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTtgg                                                                                                                                           >  3:272572‑M2/2‑146 (MQ=255)  ccAGACATCAATGGCCATCACCGCCCCCAGCGGTACCGGCGGCACTTCGATGGCCAGGTCACGCTTGCGGGCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTtggg                                                                                                                                          >  3:261062‑M2/1‑145 (MQ=255)  ccAGACATCAATGGCCATCACCGCCCCCAGCGGTACCGGCGGCACTTCGATGGCCAGGTCACGCTTGCGGGCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTtgg                                                                                                                                           >  1:172456‑M2/1‑145 (MQ=255)  ccAGACATCAATGGCCATCACCGCCCCCAGCGGTACCGGCGGCACTTCGATGGCCAGGTCACGCTTGCGGGCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTtgg                                                                                                                                           <  2:172456‑M2/148‑4 (MQ=255)   cAGACATCAATGGCCATCACCGCCCCCAGCGGTACCGGCGGCACTTCGATGGCCAGGTCACGCTTGCGGGCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTggg                                                                                                                                           >  4:272572/1‑147 (MQ=255)          cAATGGCCATCACCGCCCCCAGCGGTACCGGCGGCACTTCGATGGCCAGGTCACGCTTGCGGGCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGa                                                                                                                                   >  2:331218/1‑148 (MQ=255)           aaTGGCCATCACCGCCCCCAGCGGTACCGGCGGCACTTCGATTGCCAGGTCACGCTTGCGGGCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGa                                                                                                                                   >  1:242552/1‑147 (MQ=255)           aaTGGCCATCACCGCCCCCAGCGGTACCGGCGGCACTTCGATGGCCAGGTCACGCTTGCGGGCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGAc                                                                                                                                  <  2:154117/148‑1 (MQ=255)            aTGGCCATTACCGCCCCCAGCGGTACCGGCGGCACTTCGATGGCCAGGTCACGCTTGCGGGCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAg                                                                                                                                >  3:41811/1‑149 (MQ=255)               gCCATCACCGCCCCCAGCGGTACCGGCGGCACTTCGATGGCCAGGTCACGCTTGCGGGCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGc                                                                                                                              <  2:159484/148‑1 (MQ=255)                 cATCACCGCCCCCAGCGGTACCGGCGGCACTTCGATGGCCAGGTCACGCTTGCGGGCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGa                                                                                                                           <  1:331218/149‑1 (MQ=255)                       cGCCCCCAGCGGTACCGGCGGCACTTCGATGGCCAGGTCACGCTTGCGGGCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATAcgcc                                                                                                                     >  4:251280/1‑149 (MQ=255)                             cAGCGGTACCGGCGGCACTTCGATGGCCAGGTCACGCTTGCGGGCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTg                                                                                                               <  3:251280/149‑1 (MQ=255)                                        gcggcACTTCGATGGCCAGGTCACGCTTGCGGGCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGca                                                                                                     >  2:100419/1‑148 (MQ=255)                                            cACTTCGATGGCCAGGTCACGCTTGCGGGCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAgg                                                                                                <  4:41811/149‑1 (MQ=255)                                                 cGATGGCCAGGTCACGCTTGCGGGCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATAcgc                                                                                                                      <  8:129286/122‑1 (MQ=255)                                                 cGATGGCCAGGTCACGCTTGCGGGCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATAcgc                                                                                                                      >  7:129286/1‑122 (MQ=255)                                                  gATGGCCAGGTCACGCTTGCGGGCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTg                                                                                            >  4:185290/1‑147 (MQ=255)                                                        cAGGTCACGCTTGCGGGCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGtt                                                                                    <  6:58740/149‑1 (MQ=255)                                                         aGGTCACGCTTGCGGGCATGGCCGATATCGACAATGGCGCAGGCACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGTACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTc                                                                                   >  7:312765/1‑149 (MQ=255)                                                              aCGCTTGCGGGCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCa                                                                                          >  5:59078/1‑137 (MQ=255)                                                              aCGCTTGCGGGCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCa                                                                                          <  6:59078/137‑1 (MQ=255)                                                                gCTTGCGGGCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCa                                                                                          >  2:330662/1‑135 (MQ=255)                                                                gCTTGCGGGCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCa                                                                                          <  1:330662/135‑1 (MQ=255)                                                                  ttGCGGGCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAg                                                                          >  8:130126/1‑149 (MQ=255)                                                                      gggCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAGGGc                                                                       >  5:353963/1‑148 (MQ=255)                                                                              ccGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGgc                                                             <  3:185290/149‑1 (MQ=255)                                                                                gATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGgcgc                                                           <  2:242552/149‑1 (MQ=255)                                                                                  tatCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAgg                                                                         >  3:7235/1‑134 (MQ=255)                                                                                  tatCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAgg                                                                         <  4:7235/134‑1 (MQ=255)                                                                                      gACACTGTCGCAGGGAAGCCCGCTACCCACCAGTAACTGTGCCACCCGTTCGACCGGGGGTTGGGTAGCGGAGAGGCCGATACTCCGCAGTGTCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGGCGCCACGCt                                                     <  8:312765/149‑1 (MQ=255)                                                                                      gACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGGCGCCACGCt                                                     >  2:56523/1‑149 (MQ=255)                                                                                      gACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGGCGCCACGCt                                                     >  5:130438/1‑149 (MQ=255)                                                                                                     aCGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGGCGCCACGCTTGTTACCGGCCAAgg                                      >  2:192862/1‑149 (MQ=255)                                                                                                         ccGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTtgggtagcgggcgtccctgcgccattgtcgatatcggccatgcccgcaagcgtgacctggccatcgaagtgccgccggtaccgctgggggcggtgatggccattgat                                   <  5:325752‑M2/149‑108 (MQ=255)                                                                                                         ccGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGGCGCCACGCTTGTTACCGGCCAAGGCATg                                  >  4:29574/1‑149 (MQ=255)                                                                                                         ccGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGGCGCCACGCTTGTTACCGGCCAAGACATg                                  <  7:130126/149‑1 (MQ=255)                                                                                                          cGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACTAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGGCGCCACGCTTGTTACCGGCCAAGGCATg                                  >  8:39712/1‑148 (MQ=255)                                                                                                             tACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTtgggtagcgggcgtccctgcgccattgtcgatatcggccat                                                                                                     >  6:28983‑M2/1‑38 (MQ=255)                                                                                                             tACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTtgggtagcgggcgtccctgcgccattgtcgatatcggccat                                                                                                     <  5:28983‑M2/79‑42 (MQ=255)                                                                                                                  accaGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGGCGCCACGCTTGTTACCGGCCAAGGCATGGATTtcgtc                         >  1:211616/1‑149 (MQ=255)                                                                                                                  accaGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGGCGCCACGCTTGTTACCGGCCAAGGCATGGATTtcgtc                         <  2:211616/149‑1 (MQ=255)                                                                                                                   ccaGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGGCGCCACGCTTGTTACCGGCCAAGGCATGGATTtcgtc                         >  5:117189/1‑148 (MQ=255)                                                                                                                    caGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGGCGCCACGCTTGTTACCGGCCAAGGCATGGATTTCGTcga                       <  3:29574/149‑1 (MQ=255)                                                                                                                        aaCTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGGCGCCACGCTTGTTACCGGCCAAGGCATGGATTTCGTCGACGAt                   >  7:127093/1‑149 (MQ=255)                                                                                                                         aCTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGGCGCCACGCTTGTTACCGGCCAAGGCAt                                   >  8:224271/1‑132 (MQ=255)                                                                                                                         aCTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGGCGCCACGCTTGTTACCGGCCAAGGCAt                                   <  7:224271/132‑1 (MQ=255)                                                                                                                         aCTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGGCGCCACGCTTGTTACCGGCCAAGGCATGGATTTCGTCGACGAt                   >  2:182884/1‑148 (MQ=255)                                                                                                                             tgCCACCCGTTCGACCGGGCGTtgggtagcgggcgtccctgcgccattgtcgatatcggccatgcccgcaagcgtgacctggccatcgaagtgccgccggtaccgctgggggcggtgatggccattgatgtctggggcctggtgtat                 >  6:325752‑M2/1‑22 (MQ=255)                                                                                                                              gCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGGCGCCACGCTTGTTACCGGCCAAGGCATGGATTTCGTcgacg                     >  1:135492/1‑141 (MQ=255)                                                                                                                               ccACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGGCGCCACGCTTGTTACCGGCCAAGGCATGGATTTCGTCGACGATTACCgt             <  1:56523/148‑1 (MQ=255)                                                                                                                                 aCCCGTTCGCCCGGGCGTTTGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGGACAATGCTTGCAGGCGTTCCAAGGTCAGGGCTCAGATGGGCGCCACGCTTGTTACCGGCCAAGGCATGGATTTCGTCGACGATTACCgtgt           <  1:100419/149‑1 (MQ=255)                                                                                                                                 aCCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGGCGCCACGCTTGTTACCGGCCAAGGCATGGATTTCGTCGACGATTACCGtgtg          <  8:127093/149‑1 (MQ=255)                                                                                                                                 aCCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGGCGCCACGCTTGTTACCGGCCAAGGCATGGATTTCGTCGACGATTACCGtgtg          >  8:42877/1‑149 (MQ=255)                                                                                                                                     gTTAGACCGGGAGTTGGGTAGCGGACAGTCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGGAGCCACGCTTGTTACCGGCCAAGGCATGGATTTCGTCGACGATTACCGTGTGcaca      >  6:116951/1‑149 (MQ=255)                                                                                                                                        cGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGGCGCCACGCTTGTTACCGGCCAAGGCATGGATTTCGTCGACGATTACCGTGTGCACATg    <  6:117189/148‑1 (MQ=255)                                                                                                                                         gACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACTAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGGCGCCACGCTTGTTACCGGCCAAGGCATGGATTTCGTCGACGATTACCGTGTGCACATggg  <  7:39712/149‑1 (MQ=255)                                                                                                                                         gACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGGCGCCACGCTTGTTACCGGCCAAGGCATGGATTTCGTCGACGATTACCGTGTGCACATgg   <  1:182884/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                             CCCAGACATCAATGGCCATCACCGCCCCCAGCGGTACCGGCGGCACTTCGATGGCCAGGTCACGCTTGCGGGCATGGCCGATATCGACAATGGCGCAGGGACGCCCGCTACCCACCAGAAACTGTGCCACCCGTTCGACCGGGCGTTGGGTAGCGGACAGGCCGATACGCCGCAGTGGCTTTTTGCACAAGGCTTGCAGGCGTTCCAAGGTCAGGGC‑CAGATGGGCGCCACGCTTGTTACCGGCCAAGGCATGGATTTCGTCGACGATTACCGTGTGCACATGGG  >  NC_002947/1216169‑1216453

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.